A method and apparatus for botnet analysis and visualization. Network traffic is filtered to compile a list of messages. The identified messages are tokenized, classified, and aggregated and changes in the frequency of tokenized messages are identified. A display of the tokenized messages is generated and displayed via a user interface. The user interface is configured to a allow a user to review data generated based on the filtered network traffic in order to detect potential botnet activity. User input may be used to adjust filtering and tokenization of the messages.