A bicycle control apparatus is basically provided with a first gear changing device, a second gear changing device, a power supply sensor and a gear shift controller. The first gear changing device has a plurality of first shifting positions. The second gear changing device has a plurality of second shifting positions. The power supply sensor detects a power level of a power supply that is configured to supply power to at least one of the first and second gear changing device. The gear shift controller is programmed to cooperatively control the first and second gear changing devices, the gear shift controller being further programmed to individually control the first and second gear changing devices when the power level detected by the power supply sensor is lower than a first power level.