An automaton hardware engine employs a transition table organized into 2n rows, where each row comprises a plurality of n-bit storage locations, and where each storage location can store at most one n-bit entry value. Each row corresponds to an automaton state. In one example, at least two NFAs are encoded into the table. The first NFA is indexed into the rows of the transition table in a first way, and the second NFA is indexed in to the rows of the transition table in a second way. Due to this indexing, all rows are usable to store entry values that point to other rows.