Embodiments of the present invention provide a control channel resource transmission method, a base station and a user equipment which can ensure balance between performance of E-CCEs on a resource set, and further ensure scheduling and receiving performance of the E-CCEs. A control channel resource transmission method includes: mapping, by a base station, more than one enhanced control channel element E-CCE onto a resource set, where each E-CCE is mapped onto a corresponding first resource subset and a corresponding second resource subset respectively, so that each E-CCE occupies a resource of the same size or a difference between sizes of resources occupied by the E-CCEs is less than a preset threshold, where the E-CCEs are carried on the resource set for transmission; and transmitting the resource set that carries the E-CCEs to a user equipment; and demodulating, by the user equipment, the resource set and performing receiving.