An endoscope system includes: an endoscope including an insertion portion, an image pickup portion that acquires a plurality of images by time-sequentially picking up optical images of a subject by means of an objective optical system provided in a distal end portion of the insertion portion, and a channel that opens at the distal end portion of the insertion portion; a laser probe that is inserted through the channel; an image analysis portion that detects an area showing the laser probe with respect to each image; and a control portion that permits laser output only in a case where it is determined that the laser probe protrudes from the opening of the channel based on detection results with respect to the area showing the laser probe for a plurality of images that are time-sequentially consecutive.