An engine control system for a vehicle may include a sequence determination module that generates a first set of possible MPC target values and a second set of possible MPC target values. A cost module determines a first cost for the first set of possible MPC target values and a second cost for the second set of possible MPC target values. A selection module that selects MPC target values from one of the first and second sets of possible MPC target values based on the first and second costs. A transition module that receives the MPC target values, compares the MPC target values with a plurality of previous control requests, and selects a set of target values ranging from the previous control requests to the MPC target values that control a plurality of engine functions.