METHODS FOR SIMULTANEOUS POOLED GENOTYPING OF PLANTS

    公开(公告)号:EP3978625A1

    公开(公告)日:2022-04-06

    申请号:EP21207985.9

    申请日:2017-05-03

    IPC分类号: C12Q1/6827 G16B20/00

    摘要: Methods are provided for determining progeny plant genotypes from a pooled sample in which plants from multiple species of plants are contained in same pooled sample. The methods include genotyping marker alleles in two or more progeny plants, each resulting from a different parental cross, wherein the genotype information for each parent is known or obtained. The genotyping step comprises the step of calculating the probabilities that a pattern of inheritance at a previous marker locus can result in a pattern of inheritance at the marker locus based on pedigree information and genetic map distance information. The methods may use in-silico probabilistic deconvolution method, e.g. Hidden Markov Modeling or haplotype phasing.