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公开(公告)号:US11610307B2
公开(公告)日:2023-03-21
申请号:US17192383
申请日:2021-03-04
申请人: TEMPUS LABS, INC.
发明人: Stephen Yip , Irvin Ho , Lingdao Sha , Boleslaw Osinski , Aly Azeem Khan , Andrew J. Kruger , Michael Carlson , Abel Greenwald , Caleb Willis
摘要: A generalizable and interpretable deep learning model for predicting biomarker status and biomarker metrics from histopathology slide images is provided.
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公开(公告)号:US11594222B2
公开(公告)日:2023-02-28
申请号:US17387785
申请日:2021-07-28
申请人: Tempus Labs, Inc.
发明人: Eric Lefkofsky , Jonathan Ozeran
IPC分类号: G10L15/22 , G16H10/60 , G16H50/20 , G16H70/60 , G16H50/50 , G16H40/20 , G06F16/632 , H04B1/3827 , G16H70/20 , G06F3/0481 , G06F3/16
摘要: A method and system of audibly broadcasting responses to a user based on user queries about a specific patient molecular report, the method comprising receiving an audible query from the user to a microphone coupled to a collaboration device, identifying at least one intent associated with the audible query, identifying at least one data operation associated with the at least one intent, associating each of the at least one data operations with a first set of data presented on the molecular report, executing each of the at least one data operations on a second set of data to generate response data, generating an audible response file associated with the response data and providing the audible response file for broadcasting via a speaker coupled to the collaboration device.
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公开(公告)号:US20220405919A1
公开(公告)日:2022-12-22
申请号:US17684191
申请日:2022-03-01
申请人: TEMPUS LABS, INC.
发明人: Stephen Yip , Irvin Ho , Lingdao Sha , Boleslaw Osinski , Aly Azeem Khan , Andrew J. Kruger , Michael Carlson , Abel Greenwald , Caleb Willis
摘要: A generalizable and interpretable deep learning model for predicting biomarker status and biomarker metrics from histopathology slide images is provided.
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公开(公告)号:US20220335306A1
公开(公告)日:2022-10-20
申请号:US17738935
申请日:2022-05-06
申请人: TEMPUS LABS, INC.
摘要: Techniques are provided for replacing image assays using real world data and real word evidence RNA-seq analysis for assessing biologic pathways for identifying molecular subtypes. Systems of a methods diagnose HER2 status for a patient, by identifying discordant HER2 status result between the HER2 status from immunohistochemistry (IHC) and the HER2 status from fluorescence in-situ hybridization (FISH) and diagnosing HER2 status based gene expression data.
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公开(公告)号:US11414700B2
公开(公告)日:2022-08-16
申请号:US17302030
申请日:2021-04-21
申请人: Tempus Labs, Inc.
发明人: Jason Perera , Taylor Harding , Brittany Mineo , Aly A. Khan , Richard Blidner , Jenna L. Malinauskas
IPC分类号: C12P19/34 , C12Q1/6869 , C12Q1/6806 , C12Q1/6876 , C07K14/725 , C12Q1/6881
摘要: Disclosed herein are systems, methods, and compositions useful for profiling T cell receptor (TCR) and B cell receptor (BCR) repertoire using next-generation sequencing (NGS) methods. In certain embodiments, the methods include enriching a sample for TCR/BCR RNA sequences, and determining the TCR/BCR profile of a subject using five different oligonucleotide pools. Also disclosed herein are systems and methods for diagnosing, treating, or predicting infection, disease, medical conditions, therapeutic outcome, or therapeutic efficacy based on the TCR/BCR profile data from a subject in need thereof.
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公开(公告)号:US20220215900A1
公开(公告)日:2022-07-07
申请号:US17571412
申请日:2022-01-07
申请人: Tempus Labs, Inc.
摘要: Methods, systems, and software are provided for determining copy number variation status of a subject. A first plurality of nucleic acid sequences generated by whole genome sequencing at an average depth of 0.5× to 5× is obtained from a first sample. A second plurality of nucleic acid sequences generated by panel-targeted sequencing is obtained from a second sample. A first mapped dataset is obtained by mapping the first plurality of sequences to positions within a reference genome for the species of the subject. A second mapped dataset is obtained by mapping the second plurality of sequences to positions within a reference construct for genomic regions targeted by the panel-targeted sequencing. A model is applied to all or a portion of the first mapped dataset and all or a portion of the second mapped dataset, or dimensionality reduction components thereof.
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公开(公告)号:US20220213548A1
公开(公告)日:2022-07-07
申请号:US17566088
申请日:2021-12-30
申请人: Tempus Labs, Inc.
发明人: Timothy Rand
IPC分类号: C12Q1/6883 , C12Q1/6813
摘要: The present disclosure provides methods, systems, compositions, and kits for the high-throughput detection of multi-molecule biomarkers in a biological sample. The disclosed methods, systems, compositions, and kits utilize antibody-oligonucleotide tags to detect two or more molecules that are in close proximity.
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公开(公告)号:US20220208305A1
公开(公告)日:2022-06-30
申请号:US17546049
申请日:2021-12-09
申请人: Tempus Labs, Inc.
发明人: Martin Bontrager , Ashleigh McBratney , Emily Kudalkar , Daniel Ben-Isvy , Robert Huether , Andrew Walker , Norah Jacob
摘要: A method for associating published media with a subject includes receiving a cancerous biological specimen, sequencing it to obtain subject genomic data, identifying first and second alteration nomenclature matches to the subject genomic data in data extracted from first and second published media, applying a hierarchical rule set to the media based on the alteration nomenclature matches and one or more evidence metrics, the hierarchical rule set resulting in reporting a first treatment in the first medium and excluding reporting of a second treatment in the second medium despite a match between the second medium and subject disease states, identifying a reporting template based on the subject genomic data and the disease state, generating a report using the identified template, the report reporting treatments according to the hierarchical rule set, comparing the report to one or more approval criteria, and publishing the report when the approval criteria are satisfied.
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公开(公告)号:US11367508B2
公开(公告)日:2022-06-21
申请号:US16994315
申请日:2020-08-14
申请人: Tempus Labs, Inc.
发明人: Nike T. Beaubier , Joshua S K Bell , Catherine Igartua , Hailey B. Lefkofsky , Lee F. Langer , Joshua Drews
摘要: Disclosed herein are systems, methods, and compositions useful for determining cellular pathway disruption comprising the use of RNA expression level information. This determined level of disruption can assist in the identification of genetic variants that alter pathway activity, to correlate these variants with disease state and disease progression, and to identify those therapeutics most likely to be effective and which should be avoided.
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公开(公告)号:US11367004B2
公开(公告)日:2022-06-21
申请号:US17247509
申请日:2020-12-14
申请人: TEMPUS LABS, INC.
摘要: Techniques are provided for replacing image assays using real world data and real word evidence RNA-seq analysis for assessing biologic pathways for identifying molecular subtypes. Systems of a methods diagnose HER2 status for a patient, by identifying discordant HER2 status result between the HER2 status from immunohistochemistry (IHC) and the HER2 status from fluorescence in-situ hybridization (FISH) and diagnosing HER2 status based gene expression data.
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