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公开(公告)号：US20170199764A1
公开(公告)日：2017-07-13
申请号：US15381492
申请日：2016-12-16
CPC分类号： G06F9/4881 , G06F8/34 , G06F9/5005 , G06F19/18 , G06F19/28
摘要： The invention relates to bioinformatics pipelines and wrapper scripts that call executables in those pipelines and that also identify beneficial changes to the pipelines. A tool in a pipeline has a smart wrapper that can cause the tool to analyze the sequence data it receives but that can also select a change to the pipeline when circumstances warrant. In certain aspects, the invention provides a system for genomic analysis. The system includes a processor coupled to a non-transitory memory. The system is operable to present to a user a plurality of genomic tools organized into a pipeline. At least a first one of the tools comprises an executable and a wrapper script. The system can receive instructions from the user and sequence data—instructions that call for the sequence data to be analyzed by the pipeline—and select, using the wrapper script, a change to the pipeline.
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公开(公告)号：US10083064B2
公开(公告)日：2018-09-25
申请号：US15381492
申请日：2016-12-16
CPC分类号： G06F9/4881 , G06F8/34 , G06F9/5005 , G16B20/00 , G16B50/00
摘要： The invention relates to bioinformatics pipelines and wrapper scripts that call executables in those pipelines and that also identify beneficial changes to the pipelines. A tool in a pipeline has a smart wrapper that can cause the tool to analyze the sequence data it receives but that can also select a change to the pipeline when circumstances warrant. In certain aspects, the invention provides a system for genomic analysis. The system includes a processor coupled to a non-transitory memory. The system is operable to present to a user a plurality of genomic tools organized into a pipeline. At least a first one of the tools comprises an executable and a wrapper script. The system can receive instructions from the user and sequence data—instructions that call for the sequence data to be analyzed by the pipeline—and select, using the wrapper script, a change to the pipeline.
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公开(公告)号：US09558321B2
公开(公告)日：2017-01-31
申请号：US14877378
申请日：2015-10-07
CPC分类号： G06F9/4881 , G06F8/34 , G06F9/5005 , G06F19/18 , G06F19/28
摘要： A tool in a bioinformatics pipeline can include a smart wrapper and an executable. The smart wrapper can cause the executable to analyze the sequence data it receives and can also selectively change to the pipeline when circumstances warrant. In certain aspects, a system for genomic analysis includes a processor coupled to a non-transitory memory. The system is operable to present to a user a plurality of genomic tools organized into a pipeline. At least a first one of the tools comprises an executable and a wrapper script. The system can receive instructions from the user and sequence data—instructions that call for the sequence data to be analyzed by the pipeline—and select, using the wrapper script, a change to the pipeline.
摘要翻译： 生物信息学管道中的工具可以包括智能包装和可执行文件。 智能包装器可以使可执行程序分析其接收到的序列数据，并且还可以在情况需要时选择性地更改为管道。 在某些方面，用于基因组分析的系统包括耦合到非暂时性存储器的处理器。 该系统可操作以向用户呈现组织成管道的多个基因组工具。 至少第一个工具包括可执行文件和包装器脚本。 该系统可以接收来自用户的指令和序列数据指令，该数据指令调用要由流水线分析的序列数据，并使用包装器脚本来选择对流水线的更改。
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公开(公告)号：US20160103659A1
公开(公告)日：2016-04-14
申请号：US14877378
申请日：2015-10-07
CPC分类号： G06F9/4881 , G06F8/34 , G06F9/5005 , G06F19/18 , G06F19/28
摘要： The invention relates to bioinformatics pipelines and wrapper scripts that call executables in those pipelines and that also identify beneficial changes to the pipelines. A tool in a pipeline has a smart wrapper that can cause the tool to analyze the sequence data it receives but that can also select a change to the pipeline when circumstances warrant. In certain aspects, the invention provides a system for genomic analysis. The system includes a processor coupled to a non-transitory memory. The system is operable to present to a user a plurality of genomic tools organized into a pipeline. At least a first one of the tools comprises an executable and a wrapper script. The system can receive instructions from the user and sequence data—instructions that call for the sequence data to be analyzed by the pipeline—and select, using the wrapper script, a change to the pipeline.
摘要翻译： 本发明涉及在这些管道中调用可执行程序的生物信息学管道和包装脚本，并且还识别对管道的有益改变。 管道中的工具具有智能包装器，可以使工具分析其接收到的序列数据，但是当情况需要时也可以选择管道更改。 在某些方面，本发明提供了用于基因组分析的系统。 该系统包括耦合到非暂时性存储器的处理器。 该系统可操作以向用户呈现组织成管道的多个基因组工具。 至少第一个工具包括可执行文件和包装器脚本。 该系统可以接收来自用户的指令和序列数据指令，该数据指令调用要由流水线分析的序列数据，并使用包装器脚本来选择对流水线的更改。
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