公开(公告)号：US20130138355A1

公开(公告)日：2013-05-30

申请号：US13681046

申请日：2012-11-19

申请人： Stuart John INGLIS ,  Leonard Eric TRIGG ,  Alan Timothy Jon JACKSON ,  Sean Alistair IRVINE

发明人： Stuart John INGLIS ,  Leonard Eric TRIGG ,  Alan Timothy Jon JACKSON ,  Sean Alistair IRVINE

IPC分类号： G06F19/16

CPC分类号： G06N5/04 ,  G16B15/00 ,  G16B30/00

摘要： A method of evaluating correlation between sequences by employing a hierarchy of evaluation algorithms. The evaluation algorithms may be arranged in order of computational efficiency as specified by a user or as determined by the system. The algorithms may range from a simple equality algorithm through to seeded alignment algorithms etc.Distributed and parallel processing systems may be employed in the method of the invention in graphical processing units may be employed.The method may be employed with a wide range of sequencers including sequencers produced by Illumina Inc Complete Genomics Inc. and Pacific Biosciences Inc.

摘要翻译： 通过采用评估算法的层次来评估序列之间的相关性的方法。 评估算法可以按照由用户指定的或由系统确定的计算效率的顺序排列。 算法可以从简单的等式算法到种子对准算法等。分布式和并行处理系统可以在图形处理单元中用于本发明的方法。 该方法可以用于广泛的定序器，包括由Illumina Inc Complete Genomics Inc.和Pacific Biosciences Inc.生产的定序器