The invention relates to an application of femto-second laser in the surface treatment of the pure titanium implanting material, belonging to the technical field of application of laser in the material surface treatment. The application method comprises the following steps: in the air, the femto-laser impulse is in normal incidence and focused right on the top of the lump pure titanium implantingmaterial which is ground and dried, a light spot with a radius of 5um is formed at the surface of the pure titanium implanting material, the femto-laser processing parameters are defined as follows: the impulse repeat frequency is 1 kHz, the single impulse power is from 5 to 200 micro joule, the impulse width is 50 femtosecond, the impulse center wavelength is 800 nanometer, the line interval of the laser processing is between 10 to 100 micron, the laser scanning speed is between 0.5 to 1.2 mm/sec, the laser polarization direction is regulated to be parallel to the laser scanning direction, the femto-laser scans the whole surface of the pure titanium implanting material, a titanium based biomedical material with an oxide layer generated on the titanium surface, even roughness, and a pattern of strips, holes, grooves or the combined pattern thereof formed on the pure titanium implanting material is made.