A method for configuring an interface unit of a computer system with a first processor and a second processor stored in the interface unit. A data link is set up between the first processor and the second processor. A peripheral of the computer system is configured to store input data in an input data channel and to read output data from an output data channel, and the second processor is configured to read the input data from the input data channel and to store output data in the output data channel. A sequence of processor commands for the second processor is created such that a number of subsequences is created.