It is challenging to detect end of stroke for hydraulically actuated, reciprocating piston pumps for a variety of reasons. When the pump pressurizes a process fluid to a 10 relatively low pressure the magnitude of hydraulic fluid pressure is not as distinct compared to the magnitude of a pressure drop across a shuttle valve employed to detect end of stroke, which makes detecting the end of stroke event difficult. A method is disclosed for detecting end of a piston stroke in a hydraulic motor comprising a reciprocating piston with a shuttle valve. The method comprises 1 detecting end of piston stroke when a magnitude of a rate of change of hydraulic fluid pressure is substantially greater than a magnitude of a mean rate of change of hydraulic fluid pressure over said piston stroke; and noise in a hydraulic fluid pressure signal is substantially negligible.