Provided are a method and apparatus for processing packets. A method for processing packets in a base station (ENB) may include: obtaining information on a rule for dealing with a packet according to supplementary information contained in the header of the packet; receiving a packet; extracting supplementary information from the header of the received packet; and processing the received packet on the basis of the obtained rule information and extracted supplementary information. Hence, the base station may adequately perform packet control operations in accordance with the state thereof.