A method for testing autonomous reconfiguration logic for an electromechanical actuator includes executing a plurality of test cases against a computer model configured and operable to implement autonomous reconfiguration logic for an electromechanical actuator including a plurality of electromechanical motors to generate a first set of test results. The method further includes executing the plurality of test cases against a programmable logic device configured and operable to implement the autonomous reconfiguration logic for the electromechanical actuator to generate a second set of test results and comparing the first set of test results to the second set of test results.