System, methods, and other embodiments described herein relate to addressing inconsistencies between a trajectory plan and a communication from an occupant of an autonomously operated vehicle. A method of resolving inconsistent communication includes obtaining a trajectory plan for the vehicle, detecting, using one or more internal sensors, body language of the occupant, analyzing sensor data from the one or more internal sensors to determine a verbal or non-verbal communication indication by the occupant, and detecting an inconsistency between the verbal or non-verbal communication indication and the trajectory plan and: 1) modifying the trajectory plan to form a modified trajectory plan aligned with the verbal or non-verbal communication indication, or 2) transmitting a notification to the occupant prompting the occupant to adjust the verbal or non-verbal communication indication.