A system and method for energy management of hybrid power generation systems is provided. In some implementations, an energy power management system (EPMS) may receive information indicating a health event for a hybrid power generation system comprising a battery. The EPMS may modify a battery charging condition based on the information indicating the health event. Further, the EPMS may direct the hybrid power generation system to charge the battery based on a state of charge (SOC) of the battery and the modified battery charging condition. Also, the EPMS may direct the hybrid power generation system to modify one or more system parameters based on the modified battery charging condition.