The disclosed embodiments relate to a method and system for regeneration of a catalyst. The system includes an engine that creates an exhaust stream and a fuel supply adapted to supply a fuel stream to the engine. A reactor includes a catalyst and is in fluid communication with the engine to receive the exhaust stream. A sensor senses a system parameter and produces a signal corresponding to the system parameter. A controller receives the signal and directs at least a portion of the exhaust stream or at least a portion of the fuel stream to the catalyst to control a regeneration operation based on a value of the system parameter sensed by the sensor.