A method and system for controlling an engine includes a homogenous charge compression ignition (HCCI) mode control module that operates an engine in HCCI mode and a condition monitor module that monitors operating conditions of the engine. The control module also includes a condition predictor module that generates a first predicted condition of a catalyst in response to the operating conditions of the engine. A comparison module compares the first predicted condition to a first threshold. A spark injection mode control module operates the engine in a spark injection mode in response to comparing.