A method, system and computer program product are provided for implementing health check for optical cable attached Peripheral Component Interconnect Express (PCIE) enclosures in a computer system. System firmware is provided for implementing health check functions. One or more optical cables are connected between a host bridge and a PCIE enclosure. A PCIE link to the PCIE enclosure is reset responsive to a predefined event. After a set delay, a PCIE link health check is performed verifying PCIE link width and speed.