A package for compartmentalized preservation of harvested fruit or vegetables and methods are disclosed. The package may include a first flexible polymer film, comprising integral molded or vacuum formed cups configured to hold a fruit or vegetable, wherein the integral molded or vacuum formed cups can be collapsed into a plane of the first polymer film or extended from the first polymer film; and a second flexible polymer film configured to overlay the first polymer film. In some embodiments, the cups containing the fruit or vegetable may be inflated and sealed to form protective bubbles.