An apparatus for disinfecting containers comprises a disinfection chamber 12 surrounding a required section of a container transport path, partition means for dividing the interior of the disinfection chamber 12 into a preheating zone 35, an exposure zone 36 and a drying zone 37 as arranged downstream from an upstream side of the transport path, antiseptic supply means for supplying hydrogen peroxide gas or mist to the exposure zone 36, and means for supplying hot air to the preheating zone 35 and the drying zone 37.