A programmable logic device or field programmable gate array includes an on-chip clock synchronization circuit to synchronize a reference or system clock signal. The clock synchronization circuit is a delay-locked loop (DLL) circuit in one implementation and a phase-locked loop (PLL) circuit in another implementation. The DLL or PLL circuits may be analog or digital. The clock synchronization circuit generates a synchronized clock signal that is distributed throughout the programmable integrated circuit. The synchronized clock signal is programmably connected to the programmable logic elements or logic array blocks (LABs) of the integrated circuit. The clock synchronization circuit reduces or minimizes clock skew when distributing a clock signal within the integrated circuit. The clock synchronization circuit improves the overall performance of the programmable logic integrated circuit.