Provided is a satellite control system based on integrated satellite operation data and a method thereof. The satellite control system includes: a satellite operation data schema editing means for creating a document type definition file and defining a schema; a mission planning means for creating a mission timeline and recording the mission timeline; a command planning means for converting a task into telecommands and recording the telecommand; a command preparing means for creating a telecommand procedure and recording the telecommand procedure; a command transmitting means for creating a telecommand code, transmitting the telecommand code to a satellite and recording the telecommand code; a command verifying means for receiving telemetry data and recording a telecommand verification result; and a performance result reporting means for creating a mission performance result and recording the mission performance result.