A method for determining the amount of fuel flow from a high pressure gas tank to the anode side of a fuel cell stack through pulsed injector. The anode sub-system pressure is measured just before the injector pulse and just after injector pulse and a difference between the pressures is determined. The difference between the pressures, the volume of the anode sub-system, the ideal gas constant, the anode sub-system temperature, the fuel consumed from the reaction in the fuel cell stack during the injection event and the fuel cross-over through membranes in the fuel cells of the fuel cell stack are used to determine the amount of hydrogen gas injected by the injector.