A compensation table generating system includes a test signal applying part which applies a test signal corresponding to reference gray scales to a display panel, an image obtaining part which obtains a test image of each of the reference gray scales displayed on the display panel based on the test signal, a position information extractor which measures a brightness distribution of each of the reference gray scales of the display panel based on the test image of each of the reference gray scales and extracts a representative position information of an stain area, in which a stain appears, based on the brightness distribution of each of the reference gray scales, a compensation data calculator which calculates a compensation data corresponding to a position of the stain area, and a brightness compensation table which stores the representative position information and the compensation data.