A method for controlling automatic shut off of an engine includes determining if a control system of a propulsion-generating vehicle is operating in a remote control mode or an onboard control mode. The operations of the vehicle are remotely controlled from an off-board source when the control system is in the remote control mode. The operations of the vehicle are controlled from onboard the vehicle when the control system is in the onboard control mode. The method also includes deactivating an automatic engine start-stop (AESS) device responsive to the control system being in or switched to the remote control mode. The AESS device automatically turns off an engine of the vehicle when operations of the engine are below one or more designated thresholds for at least a designated period of time. The AESS device is prevented from automatically turning the engine off when the AESS device is deactivated.