A method for reconditioning a fuel cell stack. The method includes periodically increasing the relative humidity level of the cathode input airflow to the stack to saturate the cell membrane electrode assemblies to be greater than the relative humidity levels during normal stack operating conditions. The method also includes providing hydrogen to the anode side of the fuel cell stack at system shut down while the membrane electrode assemblies are saturated without stack loads being applied so that the hydrogen crosses the cell membranes to the cathode side and reacts with oxygen to reduce stack contaminants.