An apparatus and a method for transmitting control information in a small base station of a wireless communication system are provided. In the method, when the small base station operates in a Low Duty operation Mode (LDM) in a superframe, a control signal including LDM operation information is generated. Only a subframe via which a preamble, a control signal including the LDM operation information, and a SuperFrame Header (SFH) are transmitted is transmitted during the superframe. When the small base station operates in a normal operation mode in a superframe, at least one of the control information and data is transmitted via at least one subframe of the superframe.