An apparatus includes a filtration skid configured to generate a filtrate through at least one of microfiltration and ultrafiltration. The apparatus further includes a desalination skid fluidly connected to the filtration skid. The desalination skid is configured to perform reverse osmosis desalination on the filtrate to generate a permeate, where the filtrate travels from the filtration skid to the desalination skid without traversing a storage tank. In one embodiment, the apparatus further comprises a controller, where the filtration skid and the desalination skid are integrated to provide self-adaptive operation of the filtration skid and the desalination skid in response to control by at least one of a supervisory controller and a local controller. In one embodiment, the control responds to at least one of temporal variability of feed water quality, a permeate production capacity target, and a permeate quality target.