Abstract:
Training a neural network to correct motion-induced artifacts in magnetic resonance images includes acquiring motion-free magnetic resonance image (MRI) data of a target object and applying a spatial transformation matrix to the motion-free MRI data. Multiple frames of MRI data are produced having respective motion states. A Non-uniform Fast Fourier Transform (NUFFT) can be applied to generate respective k-space data sets corresponding to each of the multiple frames of MRI; the respective k-space data sets can be combined to produce a motion-corrupted k-space data set and an adjoint NUFFT can be applied to the motion-corrupted k-space data set. Updated frames of motion-corrupted MRI data can be formed. Using the updated frames of motion corrupted MRI data, a neural network can be trained that generates output frames of motion free MRI data; and the neural network can be saved.
Abstract:
Methods, computing devices, and magnetic resonance imaging systems that improve image quality in turbo spiral echo (TSE) imaging are disclosed. With this technology, a TSE pulse sequence is generated that includes a series of radio frequency (RF) refocusing pulses to produce a corresponding series of nuclear magnetic resonance (NMR) spin echo signals. A gradient waveform including a plurality of segments is generated. The plurality of segments collectively comprise a spiral ring retraced in-out trajectory. During an interval adjacent to each of the series of RF refocusing pulses, a first gradient pulse is generated according to the gradient waveform. The first gradient pulses encode the NMR spin echo signals. An image is then constructed from digitized samples of the NMR spin echo signals obtained based at least in part on the encoding.
Abstract:
Suppressing artifacts in MRI image acquisition data includes alternatives to phase cycling by using a Convolutional Neural Network to suppress the artifact-generating echos. A U-NET CNN is trained using phase-cycled artifact-free images for ground truth comparison with received displacement encoded stimulated echo (DENSE) images. The DENSE images include data from a single acquisition with both stimulated (STE) and T1-relaxation echoes. The systems and methods of this disclosure are explained as generating artifact-free images in the ultimate output and avoiding the additional data acquisition needed for phase cycling and shortens the scan time in DENSE MRI.
Abstract:
Systems, methods of reducing off-resonance blurring in acquired magnetic resonance imaging data. The method includes acquiring a first set of spiral interleaf data for each of one or more spiral-in/out interleaves by performing a first sampling each of one or more locations in k-space along a first redundant spiral-in/out trajectory, and acquiring a second set of spiral interleaf data for each of the one or more spiral-in/out interleaves by performing a second sampling of each of the one or more locations in the k-space along a second redundant spiral-in/out trajectory, wherein the second redundant spiral-in/out trajectory corresponds to a time-reversed trajectory of the first redundant spiral-in/out trajectory. The method may yet further include combining the first set of spiral interleaf data and the second set of spiral interleaf data with an averaging operation such as to reduce artifacts.
Abstract:
Systems, methods of reducing off-resonance blurring in acquired magnetic resonance imaging data. The method includes acquiring a first set of spiral interleaf data for each of one or more spiral-in/out interleaves by performing a first sampling each of one or more locations in k-space along a first redundant spiral-in/out trajectory, and acquiring a second set of spiral interleaf data for each of the one or more spiral-in/out interleaves by performing a second sampling of each of the one or more locations in the k-space along a second redundant spiral-in/out trajectory, wherein the second redundant spiral-in/out trajectory corresponds to a time-reversed trajectory of the first redundant spiral-in/out trajectory. The method may yet further include combining the first set of spiral interleaf data and the second set of spiral interleaf data with an averaging operation such as to reduce artifacts.
Abstract:
A computer implemented method of training a deep learning convolutional neural network (CNN) to correct output magnetic resonance images includes acquiring magnetic resonance image (MRI) data for a region of interest of a subject and saving the MRI data in frames of k-space data. The method includes calculating ground truth image data from the frames k-space data. The method includes corrupting the k-space data with real noise additions into the lines of the k-space data and saving in computer memory, training pairs a ground truth frame and a corrupted frame with real noise additions. By applying the training pairs to a U-Net convolutional neural network, the method trains the U-Net to adjust output images by correcting the output images for the real noise additions.
Abstract:
MR image data can be improved by using a complex de-noising convolutional neural network such as a non-blind C-DnCNN, a network for MRI denoising that leverages complex-valued data with phase information and noise level information to improve denoising performance in various settings. The proposed method achieved superior performance on both simulated and in vivo testing data compared to other algorithms. The utilization of complex-valued operations allows the network to better exploit the complex-valued MRI data and preserve the phase information. The MR image data is subject to complex de-noising operations directly and simultaneously on both real and imaginary parts of the image data. Complex and real values are also utilized for block normalization and rectified linear units applied to the noisy image data. A residual image is predicted by the C-DnCNN and a clean MR image is available for extraction.
Abstract:
Systems and methods for performing ungated magnetic resonance imaging are disclosed herein. A method includes producing magnetic resonance image MRI data by scanning a target in a low magnetic field with a pulse sequence having a spiral trajectory; sampling k-space data from respective scans in the low magnetic field and receiving at least one field map data acquisition and a series of MRI data acquisitions from the respective scans; forming a field map and multiple sensitivity maps in image space from the field map data acquisition; forming target k-space data with the series of MRI data acquisitions; forming initial magnetic resonance images in the image domain by applying a Non-Uniform Fast Fourier Transform to the target k-space data; and forming reconstructed images with a low rank plus sparse (L+S) reconstruction algorithm applied to the initial magnetic resonance images.
Abstract:
Suppressing artifacts in MRI image acquisition data includes alternatives to phase cycling by using a Convolutional Neural Network to suppress the artifact-generating echos. A U-NET CNN is trained using phase-cycled artifact-free images for ground truth comparison with received displacement encoded stimulated echo (DENSE) images. The DENSE images include data from a single acquisition with both stimulated (STE) and T1-relaxation echoes. The systems and methods of this disclosure are explained as generating artifact-free images in the ultimate output and avoiding the additional data acquisition needed for phase cycling and shortens the scan time in DENSE MRI.
Abstract:
A method of cardiac strain analysis uses displacement encoded magnetic resonance image (MRI) data of a heart of the subject and includes generating a phase image for each frame of the displacement encoded MRI data. Phase images include potentially phase-wrapped measured phase values corresponding to pixels of the frame. A convolutional neural network CNN computes a wrapping label map for the phase image, and the wrapping label map includes a respective number of phase wrap cycles present at each pixel in the phase image. Computing an unwrapped phase image includes adding a respective phase correction to each of the potentially-wrapped measured phase values of the phase image, and the phase correction is based on the number of phase wrap cycles present at each pixel. Computing myocardial strain follows by using the unwrapped phase image for strain analysis of the subject.