FEATURE QUANTITY CALCULATING METHOD, SCREENING METHOD, AND COMPOUND CREATING METHOD

    公开(公告)号:US20230238084A1

    公开(公告)日:2023-07-27

    申请号:US18192001

    申请日:2023-03-29

    CPC classification number: G16C20/20 G16C20/50

    Abstract: According to one embodiment of the present invention, provided are a feature quantity calculating method which enables calculation of a feature quantity accurately showing chemical properties of a target structure, a screening method which enables efficient screening of a pharmaceutical candidate compound using a feature quantity, and a compound creating method which enable efficient creation of a three-dimensional structure of a pharmaceutical candidate compound using a feature quantity. In one aspect of the present invention, the feature quantity calculating method is a method including a target structure designating step of designating a target structure formed of a plurality of unit structures having chemical properties, a three-dimensional structure acquiring step of acquiring a three-dimensional structure from the plurality of unit structures for the target structure, and a probe feature quantity calculating step of calculating a feature quantity showing a cross-sectional area of one or more kinds of probes for the target structure, in which the probe is a structure in which a plurality of points having a real electric charge and generating a van der Waals force are disposed to be separated from each other.

    SIMULATION APPARATUS FOR PREDICTING BEHAVIOR OF MASS POINT SYSTEM
    4.
    发明申请
    SIMULATION APPARATUS FOR PREDICTING BEHAVIOR OF MASS POINT SYSTEM 审中-公开
    用于预测质点系统行为的模拟装置

    公开(公告)号:US20140229150A1

    公开(公告)日:2014-08-14

    申请号:US14225252

    申请日:2014-03-25

    CPC classification number: G06F17/5009 G06F2217/16 G16B15/00 G16C10/00

    Abstract: A simulation apparatus, including: a coordinate setting unit for setting slow coordinates and fast coordinates based on mass point coordinates; a coordinate extraction unit for obtaining a structure of the fast coordinates by subordinating the fast coordinates to the slow coordinates and obtaining, by taking into account influence of a change in the fast coordinates on the slow coordinates due to a change in the slow coordinates, a structure of the slow coordinates as a function of collective coordinate(s); and an inverse transformation unit for predicting time evolution of the mass point coordinates based on the collective coordinate(s), which can be obtained as a solution of a motion equation, structure of the slow coordinates, and structure of the fast coordinates.

    Abstract translation: 一种模拟装置,包括:坐标设定单元,用于基于质点坐标设定慢坐标和快速坐标; 坐标提取单元,用于通过将快速坐标附属于慢坐标来获得快速坐标的结构,并且通过考虑由于慢坐标变化引起的快速坐标变化对慢坐标的影响, 作为集体坐标函数的慢坐标结构; 以及用于基于集合坐标来预测质点坐标的时间演化的逆变换单元,其可以作为运动方程,缓慢坐标的结构和快速坐标的结构获得。

    DATA PROCESSING DEVICE, DATA PROCESSING METHOD, DATA PROCESSING PROGRAM, AND NON-TRANSITORY RECORDING MEDIUM

    公开(公告)号:US20210141859A1

    公开(公告)日:2021-05-13

    申请号:US17106829

    申请日:2020-11-30

    Abstract: An object of the present invention is to provide a data processing device, a data processing method, a data processing program, and a non-transitory recording medium capable of appropriately classifying a plurality of pieces of high-dimensional data. In a data processing device according to a first aspect, similarity between pieces of reference data (data allocated to each lattice point) is regarded as an inter-lattice-point distance without assuming a special shape in a lattice point space. Thus, since one lattice point is coupled to all other lattice points (at the inter-lattice-point distance corresponding to the similarity between the pieces of reference data) and there is no “lattice point that is distant geometrically”, information on input data can be reflected on all the lattice points, and the lattice points of substantially the same reference data do not appear at separated locations in the lattice point space. As described above, according to the data processing device of the first aspect, it is possible to appropriately classify the plurality of pieces of high-dimensional data.

    METHOD FOR SEARCHING FOR MOLECULAR STABLE STRUCTURE, PROGRAM FOR SEARCHING FOR MOLECULAR STABLE STRUCTURE, AND DEVICE FOR SEARCHING FOR MOLECULAR STABLE STRUCTURE

    公开(公告)号:US20210090685A1

    公开(公告)日:2021-03-25

    申请号:US16952210

    申请日:2020-11-19

    Abstract: Provided are a method for searching for a molecular stable structure, a program for searching for a molecular stable structure, and a device for searching for a molecular stable structure, which are capable of acquiring a stable structure and various locally stable structures from a structural formula of a compound in a short time and with high accuracy. A three-dimensional structure is generated from the structural formula of the compound, and a locally stable structure is obtained from the three-dimensional structure. A one-dimensional or multidimensional energy distribution function for one or a plurality of internal coordinates and a probability distribution function of increasing a probability of low-energy internal coordinates are calculated from internal coordinates and an energy value of the locally stable structure. The method for searching for a molecular stable structure repeats the following processes: generating a three-dimensional structure based on the calculated probability distribution function; acquiring a locally stable structure; reflecting internal coordinates and an energy value of the obtained locally stable structure on the energy distribution function and the probability distribution function; and acquiring the locally stable structure, thereby obtaining a plurality of the locally stable structures and a structure with lowest energy. The program and the device for searching for a molecular stable structure execute the method.

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