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公开(公告)号:US20250103778A1
公开(公告)日:2025-03-27
申请号:US18891687
申请日:2024-09-20
Applicant: NEC Laboratories America, Inc.
Inventor: Renqiang Min , Tianxiao Li
Abstract: Methods and systems for molecule generation include embedding an input template molecule into a latent space to generate a vector. The vector is decoded using a denoising diffusion implicit model (DDIM) to generate a new molecule specification that is based on the input template molecule. The new molecule is produced using the new molecule specification.
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2.
公开(公告)号:US20240386266A1
公开(公告)日:2024-11-21
申请号:US18666088
申请日:2024-05-16
Applicant: NEC Laboratories America, Inc.
Inventor: Jonathan Warrell , Eric Cosatto , Renqiang Min , Tianci Song
IPC: G06N3/08
Abstract: A method for graph analysis includes identifying trainable control parameters of a graph refinement function. Sample graph refinements of an input graph are generated, using control parameters sampled from a variational distribution. Graph refinement control parameters associated with a sample graph refinement that has a highest performance score are selected when used to train a graph neural network. Graph analysis is performed on the input graph using the selected graph refinement parameters to produce a refined graph on new test samples. An action is performed responsive to the graph analysis.
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3.
公开(公告)号:US20240177799A1
公开(公告)日:2024-05-30
申请号:US18414687
申请日:2024-01-17
Applicant: NEC Laboratories America, Inc.
Inventor: Renqiang Min , Hans Peter Graf , Ziqi Chen
Abstract: A method for implementing deep reinforcement learning with T-cell receptor (TCR) mutation policies to generate binding TCRs recognizing target peptides for immunotherapy is presented. The method includes extracting peptides to identify a virus or tumor cells, collecting a library of TCRs from target patients, predicting, by a deep neural network, interaction scores between the extracted peptides and the TCRs from the target patients, developing a deep reinforcement learning (DRL) framework with TCR mutation policies to generate TCRs with maximum binding scores, defining reward functions based on a reconstruction-based score and a density estimation-based score, randomly sampling batches of TCRs and following a policy network to mutate the TCRs, outputting mutated TCRs, and ranking the outputted TCRs to utilize top-ranked TCR candidates to target the virus or the tumor cells for immunotherapy.
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公开(公告)号:US20240087673A1
公开(公告)日:2024-03-14
申请号:US18471610
申请日:2023-09-21
Applicant: NEC Laboratories America, Inc.
Inventor: Renqiang Min , Hans Peter Graf , Ziqi Chen
Abstract: A method for generating binding peptides presented by any given Major Histocompatibility Complex (MHC) protein is presented. The method includes, given a peptide and an MHC protein pair, enabling a Reinforcement Learning (RL) agent to interact with and exploit a peptide mutation environment by repeatedly mutating the peptide and observing an observation score of the peptide, learning to form a mutation policy, via a mutation policy network, to iteratively mutate amino acids of the peptide to obtain desired presentation scores, and generating, based on the desired presentation scores, qualified peptides and binding motifs of MHC Class I proteins.
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公开(公告)号:US20240071570A1
公开(公告)日:2024-02-29
申请号:US18471630
申请日:2023-09-21
Applicant: NEC Laboratories America, Inc.
Inventor: Renqiang Min , Hans Peter Graf , Ziqi Chen
Abstract: A system for binding peptide search for immunotherapy is presented. The system includes employing a deep neural network to predict a peptide presentation given Major Histocompatibility Complex allele sequences and peptide sequences, training a Variational Autoencoder (VAE) to reconstruct peptides by converting the peptide sequences into continuous embedding vectors, running a Monte Carlo Tree Search to generate a first set of positive peptide vaccine candidates, running a Bayesian Optimization search with the trained VAE and a Backpropagation search with the trained VAE to generate a second set of positive peptide vaccine candidates, using a sampling from a Position Weight Matrix (sPWM) to generate a third set of positive peptide vaccine candidates, screening and merging the first, second, and third sets of positive peptide vaccine candidates, and outputting qualified peptides for immunotherapy from the screened and merged sets of positive peptide vaccine candidates.
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公开(公告)号:US11887008B2
公开(公告)日:2024-01-30
申请号:US17114946
申请日:2020-12-08
Applicant: NEC Laboratories America, Inc.
Inventor: Renqiang Min , Christopher Malon , Hans Peter Graf
IPC: G06N3/08 , G06N3/088 , G06F40/20 , G10L15/06 , G10L15/16 , G10L15/22 , G06N3/086 , G06N3/02 , G06N3/082
CPC classification number: G06N3/088 , G06F40/20 , G06N3/08 , G06N3/086 , G10L15/063 , G10L15/16 , G10L15/22 , G06N3/02 , G06N3/082
Abstract: Methods and systems for disentangled data generation include accessing a dataset including pairs, each formed from a given input text structure and a given style label for the input text structures. An encoder is trained to disentangle a sequential text input into disentangled representations, including a content embedding and a style embedding, based on a subset of the dataset, using an objective function that includes a regularization term that minimizes mutual information between the content embedding and the style embedding. A generator is trained to generate a text output that includes content from the style embedding, expressed in a style other than that represented by the style embedding of the text input.
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公开(公告)号:US20230083313A1
公开(公告)日:2023-03-16
申请号:US17898662
申请日:2022-08-30
Applicant: NEC Laboratories America, Inc.
Inventor: Renqiang Min , Hans Peter Graf , Ziqi Chen
Abstract: A system for binding peptide search for immunotherapy is presented. The system includes employing a deep neural network to predict a peptide presentation given Major Histocompatibility Complex allele sequences and peptide sequences, training a Variational Autoencoder (VAE) to reconstruct peptides by converting the peptide sequences into continuous embedding vectors, running a Monte Carlo Tree Search to generate a first set of positive peptide vaccine candidates, running a Bayesian Optimization search with the trained VAE and a Backpropagation search with the trained VAE to generate a second set of positive peptide vaccine candidates, using a sampling from a Position Weight Matrix (sPWM) to generate a third set of positive peptide vaccine candidates, screening and merging the first, second, and third sets of positive peptide vaccine candidates, and outputting qualified peptides for immunotherapy from the screened and merged sets of positive peptide vaccine candidates.
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公开(公告)号:US20220171989A1
公开(公告)日:2022-06-02
申请号:US17529622
申请日:2021-11-18
Applicant: NEC Laboratories America, Inc.
Inventor: Renqiang Min , Asim Kadav , Hans Peter Graf , Ligong Han
Abstract: A computer-implemented method for representation disentanglement is provided. The method includes encoding an input vector into an embedding. The method further includes learning, by a hardware processor, disentangled representations of the input vector including a style embedding and a content embedding by performing sample-based mutual information minimization on the embedding under a Wasserstein distance regularization and a Kullback-Leibler (KL) divergence. The method also includes decoding the style and content embeddings to obtain a reconstructed vector.
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公开(公告)号:US10853937B2
公开(公告)日:2020-12-01
申请号:US16248955
申请日:2019-01-16
Applicant: NEC Laboratories America, Inc.
Inventor: Alexandru Niculescu-Mizil , Renqiang Min , Eric Cosatto , Farley Lai , Hans Peter Graf , Xavier Fontaine
Abstract: A false alarm reduction system is provided that includes a processor cropping each input image at randomly chosen positions to form cropped images of a same size at different scales in different contexts. The system further includes a CONDA-GMM, having a first and a second conditional deep autoencoder for respectively (i) taking each cropped image without a respective center block as input for measuring a discrepancy between a reconstructed and a target center block, and (ii) taking an entirety of cropped images with the target center block. The CONDA-GMM constructs density estimates based on reconstruction error features and low-dimensional embedding representations derived from image encodings. The processor determines an anomaly existence based on a prediction of a likelihood of the anomaly existing in a framework of a CGMM, given the context being a representation of the cropped image with the center block removed and having a discrepancy above a threshold.
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10.
公开(公告)号:US10296430B2
公开(公告)日:2019-05-21
申请号:US15478753
申请日:2017-04-04
Applicant: NEC Laboratories America, Inc.
Inventor: Jianwu Xu , Ke Zhang , Hui Zhang , Renqiang Min , Guofei Jiang
Abstract: Mobile phones and methods for mobile phone failure prediction include receiving respective log files from one or more mobile phone components, including at least one user application. The log files have heterogeneous formats. A likelihood of failure of one or more mobile phone components is determined based on the received log files by clustering the plurality of log files according to structural log patterns and determining feature representations of the log files based on the log clusters. A user is alerted to a potential failure if the likelihood of component failure exceeds a first threshold. An automatic system control action is performed if the likelihood of component failure exceeds a second threshold.
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