The embodiment of the invention discloses a controller and a superconducting maglev vehicle control system provided with the same. The controller is applied to the superconducting maglev vehicle control system and comprises a transmitting terminal and a receiving terminal. The transmitting terminal is installed on the side of straight line primary coils on a superconducting maglev vehicle operation track and is used for transmitting detection signals. The receiving terminal is installed on the side of linear motor secondary coils on a superconducting maglev vehicle and is used for receiving the detection signals and converting the detection signals into electrical signals. The controller comprises a field programmable gate array and a microprocessor and is used for controlling the operation state of the superconducting maglev vehicle according to the electrical signals so that real-time communicate between the field programmable gate array and the microprocessor can be conducted, the communication speed between the field programmable gate array and the microprocessor is increased, accordingly the processing speed of the controller is increased, and operation security of the superconducting maglev vehicle at high speed is guaranteed.