In the management of a facility pumping water from a natural environment containing impurities, the facility makes use of at least one rotary filter purifying the pumped water while some impurities at least partially clog the rotary filter. In particular, provision is made for estimating an evolution over time of a pressure loss caused by impurities clogging the rotary filter, based at least on data relating to the natural environment, dimensions of the rotary filter, and local measurements relating to at least one water level Namont upstream of the filter and to a flow rate of water Qaspiré drawn in downstream of the filter. Such an estimate of the evolution over time of the pressure loss makes it possible to anticipate possible risks of insufficient water supply to the pumping system (POM) downstream of the filter (FIL), or even to design filters (FIL) adapted to the needs of specific pumping facilities.