An apparatus for controlling a throttle valve electronically in an internal combustion engine. A rotational rod is coupled to a gear lever and the mechanism for putting the throttle back, which is protected by a cover. A throttle sensor is coupled to the rotational rod, which is also covered by a cover. Since the mechanism for putting the throttle back is covered, it is easy to prevent the deterioration of the mechanical parts, the entry of the foreign matter, corrosion, and to improve reliability. Also, because the throttle sensor is installed to the end of the apparatus for controlling the throttle valve, it is easy to adjust/readjust or install/exchange the throttle sensor, improve miniaturization, reduce weight, and lower cost.