Lossless compression of the enumeration space of founder line crosses
    3.
    发明授权
    Lossless compression of the enumeration space of founder line crosses 有权
    创始人行列的计数空间的无损压缩

    公开(公告)号:US09075748B2

    公开(公告)日:2015-07-07

    申请号:US14049830

    申请日:2013-10-09

    IPC分类号: H03M7/30 G06F19/14

    摘要: Various embodiments provide lossless compression of an enumeration space for genetic founder lines. In one embodiment, an input comprising a set of genetic founder lines and a maximum number of generations G is obtained. A set of genetic crossing templates of a height h is generated. A determination is made if at least a first genetic crossing template in the set of genetic crossing templates is redundant with respect to a second genetic crossing template in the set of genetic crossing templates. Based on the at least first genetic crossing template being redundant is redundant with respect to the second genetic crossing template, the at least first genetic crossing template is removed from the set of genetic crossing templates. This process of removing the at least first genetic crossing template from the set of genetic crossing templates the redundant creates an updated set of genetic crossing templates.

    摘要翻译: 各种实施例提供了遗传创始人线的枚举空间的无损压缩。 在一个实施例中,获得包括一组遗传创始人行和最大代数G的输入。 产生一组高度h的遗传交叉模板。 确定遗传交叉模板集合中的至少第一遗传交叉模板相对于遗传交叉模板集合中的第二遗传交叉模板是多余的。 基于所述至少第一遗传交叉模板是冗余的,相对于所述第二遗传交叉模板是冗余的,所述至少第一遗传交叉模板从所述遗传交叉模板集合中去除。 从遗传杂交模板组中去除至少第一个遗传交叉模板的该过程产生了更新的一组遗传交叉模板。

    Feature selection for efficient epistasis modeling for phenotype prediction

    公开(公告)号:US11335433B2

    公开(公告)日:2022-05-17

    申请号:US16131175

    申请日:2018-09-14

    摘要: Various embodiments select markers for modeling epistasis effects. In one embodiment, a processor receives a set of genetic markers and a phenotype. A relevance score is determined with respect to the phenotype for each of the set of genetic markers. A threshold is set based on the relevance score of a genetic marker with a highest relevancy score. A relevance score is determined for at least one genetic marker in the set of genetic markers for at least one interaction between the at least one genetic marker and at least one other genetic marker in the set of genetic markers. The at least one interaction is added to a top-k feature set based on the relevance score of the at least one interaction satisfying the threshold.

    Feature selection for efficient epistasis modeling for phenotype prediction

    公开(公告)号:US11335434B2

    公开(公告)日:2022-05-17

    申请号:US16131229

    申请日:2018-09-14

    摘要: Various embodiments select markers for modeling epistasis effects. In one embodiment, a processor receives a set of genetic markers and a phenotype. A relevance score is determined with respect to the phenotype for each of the set of genetic markers. A threshold is set based on the relevance score of a genetic marker with a highest relevancy score. A relevance score is determined for at least one genetic marker in the set of genetic markers for at least one interaction between the at least one genetic marker and at least one other genetic marker in the set of genetic markers. The at least one interaction is added to a top-k feature set based on the relevance score of the at least one interaction satisfying the threshold.

    Lossless compression of the enumeration space of founder line crosses

    公开(公告)号:US09041566B2

    公开(公告)日:2015-05-26

    申请号:US14014635

    申请日:2013-08-30

    IPC分类号: H03M7/00 H03M7/40

    摘要: Various embodiments provide lossless compression of an enumeration space for genetic founder lines. In one embodiment, an input comprising a set of genetic founder lines and a maximum number of generations G is obtained. A set of genetic crossing templates of a height h is generated. A determination is made if at least a first genetic crossing template in the set of genetic crossing templates is redundant with respect to a second genetic crossing template in the set of genetic crossing templates. Based on the at least first genetic crossing template being redundant is redundant with respect to the second genetic crossing template, the at least first genetic crossing template is removed from the set of genetic crossing templates. This process of removing the at least first genetic crossing template from the set of genetic crossing templates the redundant creates an updated set of genetic crossing templates.