A method of manufacturing a crankshaft includes the steps of: (1) forming a crankshaft blank via a first half and a second half; (2) measuring a plurality of surface variations between a predetermined surface in a first region and a corresponding predetermined surface in a second region of the crankshaft blank; (3) calculating centering offset data based on the plurality of surface variations; (4) machining a pair center holes based on the centering offset data; (5) machining a counterweight and a journal relative to the pair of center holes to produce a partially machined crankshaft; (5) milling and grinding the partially machined crankshaft to produce a finished machined crankshaft; and (6) rotating the finished machined crankshaft typically on the outermost main journals in a final balancing machine and then modifying the counterweights to eliminate undesirable vibration generated during the rotation and engine operation.