Methods are systems for calculating log-likelihood ratios for a decoder utilized in an electronic non-volatile computer storage apparatus are disclosed. A log-likelihood ratio handler is configured to provide an input log-likelihood ratio to the decoder, wherein the input log-likelihood ratio is one of: a uniform input log-likelihood ratio for all bits calculated based on an estimated raw bit error rate for a particular data unit, or a bit-based input log-likelihood ratio for each bit calculated based on a confidence value for a cell containing said each bit. The decoder of the electronic non-volatile computer storage apparatus is configured to decode encoded data at least partially based on the input log-likelihood ratio from the log-likelihood ratio handler.