Invention Grant
- Patent Title: Methods and computer program products for compression of sequencing data
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Application No.: US14018069Application Date: 2013-09-04
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Publication No.: US09864846B2Publication Date: 2018-01-09
- Inventor: Charles Sugnet , Simon Cawley , Mohit Gupta , Iztok Marjanovic , Mark Beauchemin , Todd Rearick
- Applicant: LIFE TECHNOLOGIES CORPORATION
- Applicant Address: US CA Carlsbad
- Assignee: Life Technologies Corporation
- Current Assignee: Life Technologies Corporation
- Current Assignee Address: US CA Carlsbad
- Main IPC: G06F19/10
- IPC: G06F19/10 ; G11C17/00 ; H03M7/30 ; G06F19/00

Abstract:
A compression method includes: measuring a waveform associated with a chemical event occurring on a sensor array, wherein the waveform comprises a plurality of measured values and the chemical event is indicative of a number of nucleotide incorporations in a genetic sequencing reaction; applying a first compression process to the waveform, the first compression process including a truncating of data corresponding to a portion of the waveform that is not related to nucleotide incorporations in the genetic sequencing reaction; and applying a second compression process to the waveform, the second compression process including a data substitution process that replaces at least a portion of the waveform with a plurality of coefficients representative of the portion of the waveform.
Public/Granted literature
- US20140093881A1 Methods and Computer Program Products for Compression of Sequencing Data Public/Granted day:2014-04-03
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