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公开(公告)号:EP2912468B1
公开(公告)日:2018-09-12
申请号:EP13851273.6
申请日:2013-10-17
发明人: KINDE, Isaac , KINZLER, Kenneth W. , VOGELSTEIN, Bert , PAPADOPOULOS, Nickolas , DIAZ, Luis , BETTEGOWDA, Chetan , WANG, Yuxuan
IPC分类号: C12Q1/6886
CPC分类号: C12Q1/6886 , C12Q2600/154 , C12Q2600/156 , C12Q2600/158 , C12Q2600/16 , G01N33/57442 , G01N33/57449
摘要: The recently developed liquid-based Papanicolaou (Pap) smear allows not only cytologic evaluation but also collection of DNA for detection of HPV, the causative agent of cervical cancer. We tested these samples to detect somatic mutations present in rare tumor cells that might accumulate in the cervix once shed from endometrial and ovarian cancers. A panel of commonly mutated genes in endometrial and ovarian cancers was assembled and used to identify mutations in all 46 endometrial or cervical cancer tissue samples. We were able also able to identify the same mutations in the DNA from liquid Pap smears in 100% of endometrial cancers (24 of 24) and in 41% of ovarian cancers (9 of 22). We developed a sequence-based method to query mutations in 12 genes in a single liquid Pap smear without prior knowledge of the tumor's genotype.
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公开(公告)号:EP3327139A1
公开(公告)日:2018-05-30
申请号:EP17191835.2
申请日:2010-04-06
发明人: VOGELSTEIN, Bert , KINZLER, Kenneth , LI, Ming , DIAZ, Luis , PAPADOPOULOS, Nickolas , MARKOWITZ, Sanford
CPC分类号: C12Q1/6816 , C12Q1/6886 , C12Q2600/154 , C12Q2565/501 , C12Q2527/125 , C12Q2523/125
摘要: Abnormal DNA methylation can be used as a biomarker in cancer patients. For such purposes, it is important to determine precisely the fraction of methylated molecules in an analyzed sample. A technology we term Methyl-BEAMing achieves this goal. Individual bisulfite-treated DNA molecules can be PCR-amplified within aqueous nanocompartments containing beads, resulting in a population of beads each containing thousands of copies of the template molecule. After hybridization with probes specific for methylated sequences, the beads can be analyzed by flow cytometry. This approach enables detection and enumeration of one methylated molecule in a population of ∼5000 unmethylated molecules. Methyl-BEAMing provides digital quantification of rare methylation events and is generally applicable to the assessment of methylated genes in clinical samples.
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公开(公告)号:EP3218004A1
公开(公告)日:2017-09-20
申请号:EP15858277.5
申请日:2015-11-12
IPC分类号: A61K39/395 , A61P35/00
CPC分类号: C07K16/2803 , A61K2039/505 , A61K2039/55 , C07K16/2818 , C07K16/2827 , C07K16/30 , C07K16/40 , C07K2317/00 , C07K2317/24 , C07K2317/76 , C12Q1/6886 , C12Q2600/106 , C12Q2600/156 , C12Y113/11052
摘要: Blockade of immune checkpoints such as cytotoxic T-lymphocyte antigen-4 (CTLA-4) and programmed death-1 (PD-1) shows promise in patients with cancer. Inhibitory antibodies directed at these receptors have been shown to break immune tolerance and promote anti-tumor immunity. These agents work particularly well in patients with a certain category of tumor. Such tumors may be particularly susceptible to treatment because of the multitude of neoantigens which they produce.
摘要翻译: 免疫检查点如细胞毒性T淋巴细胞抗原-4(CTLA-4)和程序性死亡-1(PD-1)的阻断在癌症患者中显示出希望。 已经显示针对这些受体的抑制性抗体会破坏免疫耐受性并促进抗肿瘤免疫力。 这些药物在某类肿瘤患者中效果特别好。 由于它们产生大量的新抗原,这些肿瘤可能特别容易受到治疗。
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公开(公告)号:EP2417270B1
公开(公告)日:2017-09-20
申请号:EP10762298.7
申请日:2010-04-06
发明人: VOGELSTEIN, Bert , KINZLER, Kenneth, W. , LI, Meng , DIAZ, Luis , PAPADOPOULOS, Nickolas , MARKOWITZ, Sanford
CPC分类号: C12Q1/6816 , C12Q1/6886 , C12Q2600/154 , C12Q2565/501 , C12Q2527/125 , C12Q2523/125
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公开(公告)号:EP2723896A2
公开(公告)日:2014-04-30
申请号:EP12802288.6
申请日:2012-06-22
发明人: VOGELSTEIN, Bert , KINZLER, Kenneth W. , WU, Jian , DIAZ, Luis , PAPADOPOULOS, Nickolas , MATTHAEI, Hanno , HRUBAN, Ralph , MAITRA, Anirban
CPC分类号: C12Q1/6886 , C12Q2600/112 , C12Q2600/156
摘要: To help reveal the pathogenesis of these lesions, we purified the DNA from Intraductal Papillary Mucinous Neoplasm (IPMN) cyst fluids from 19 patients and searched for mutations in 169 genes commonly altered in human cancers. We identified recurrent mutations at codon 201 of GNAS. We found that GNAS mutations were present in 66% of IPMNs and that either KRAS or GNAS mutations could be identified in 96%. In eight cases, we could investigate invasive adenocarcinomas that developed in association with IPMNs containing GNAS mutations. In seven of these eight cases, the GNAS mutations present in the IPMNs were also found in the invasive lesion. GNAS mutations were not found in other types of cystic neoplasms of the pancreas or in invasive adenocarcinomas not associated with IPMNs. These data suggest that GNAS mutations can inform the diagnosis and management of patients with cystic pancreatic lesions.
摘要翻译: 为了揭示这些病变的发病机制,我们从19名患者的导管内乳头状粘液性肿瘤(IPMN)囊肿液中纯化了DNA,并在人类癌症中通常改变的169种基因中进行了突变检测。 我们在GNAS的201号密码子处鉴定了复发性突变。 我们发现GNAS突变存在于66%的IPMNs中,KRAS或GNAS突变可以在96%中鉴定。 在8例中,我们可以研究与含有GNAS突变的IPMN相关的侵袭性腺癌。 在这8例中有7例中,存在于IPMNs中的GNAS突变也在侵袭性损伤中发现。 在其他类型的胰腺囊性肿瘤或与IPMN无关的侵袭性腺癌中未发现GNAS突变。 这些数据表明,GNAS突变可以为囊性胰腺病变患者的诊断和治疗提供依据。
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公开(公告)号:EP2536854A2
公开(公告)日:2012-12-26
申请号:EP11745196.3
申请日:2011-02-17
CPC分类号: C12Q1/6886 , C12Q2600/156
摘要: Clinical management of human cancer is dependent on the accurate monitoring of residual and recurrent tumors. We have developed a method, called personalized analysis of rearranged ends (PARE), which can identify translocations in solid tumors. Analysis of four colorectal and two breast cancers revealed an average of nine rearranged sequences (range 4 to 15) per tumor. Polymerase chain reaction with primers spanning the breakpoints were able to detect mutant DNA molecules present at levels lower than 0.001% and readily identified mutated circulating DNA in patient plasma samples. This approach provides an exquisitely sensitive and broadly applicable approach for the development of personalized biomarkers to enhance the clinical management of cancer patients.
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公开(公告)号:EP2723896B1
公开(公告)日:2017-03-01
申请号:EP12802288.6
申请日:2012-06-22
发明人: VOGELSTEIN, Bert , KINZLER, Kenneth W. , WU, Jian , DIAZ, Luis , PAPADOPOULOS, Nickolas , MATTHAEI, Hanno , HRUBAN, Ralph , MAITRA, Anirban
CPC分类号: C12Q1/6886 , C12Q2600/112 , C12Q2600/156
摘要: To help reveal the pathogenesis of these lesions, we purified the DNA from Intraductal Papillary Mucinous Neoplasm (IPMN) cyst fluids from 19 patients and searched for mutations in 169 genes commonly altered in human cancers. We identified recurrent mutations at codon 201 of GNAS. We found that GNAS mutations were present in 66% of IPMNs and that either KRAS or GNAS mutations could be identified in 96%. In eight cases, we could investigate invasive adenocarcinomas that developed in association with IPMNs containing GNAS mutations. In seven of these eight cases, the GNAS mutations present in the IPMNs were also found in the invasive lesion. GNAS mutations were not found in other types of cystic neoplasms of the pancreas or in invasive adenocarcinomas not associated with IPMNs. These data suggest that GNAS mutations can inform the diagnosis and management of patients with cystic pancreatic lesions.
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公开(公告)号:EP2315849A1
公开(公告)日:2011-05-04
申请号:EP09803662.7
申请日:2009-07-31
IPC分类号: C12Q1/68
CPC分类号: C12Q1/6886 , C12Q2525/197 , C12Q2535/131 , C12Q2549/119 , C12Q2600/112 , C12Q2600/118 , C12Q2600/136
摘要: DNA containing somatic mutations is highly tumor specific and thus, in theory, can provide optimum markers. However, the number of circulating mutant gene fragments is small compared to the number of normal circulating DNA fragments, making it difficult to detect and quantify them with the sensitivity required for meaningful clinical use. We apply a highly sensitive approach to quantify circulating tumor DNA (ctDNA) in body samples of patients. Measurements of ctDNA can be used to reliably monitor tumor dynamics in subjects with cancer, especially those who are undergoing surgery or chemotherapy. This personalized genetic approach can be generally applied.
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公开(公告)号:EP4098278A1
公开(公告)日:2022-12-07
申请号:EP22166660.5
申请日:2015-11-12
IPC分类号: A61K39/395 , A61P35/00
摘要: Blockade of immune checkpoints such as cytotoxic T-lymphocyte antigen-4 (CTLA-4) and programmed death-1 (PD-1) shows promise in patients with cancer. Inhibitory antibodies directed at these receptors have been shown to break immune tolerance and promote anti-tumor immunity. These agents work particularly well in patients with a certain category of tumor. Such tumors may be particularly susceptible to treatment because of the multitude of neoantigens which they produce.
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公开(公告)号:EP3888679A1
公开(公告)日:2021-10-06
申请号:EP21175020.3
申请日:2015-11-12
IPC分类号: A61K39/395 , A61P35/00
摘要: Blockade of immune checkpoints such as cytotoxic T-lymphocyte antigen-4 (CTLA-4) and programmed death-1 (PD-1) shows promise in patients with cancer. Inhibitory antibodies directed at these receptors have been shown to break immune tolerance and promote anti-tumor immunity. These agents work particularly well in patients with a certain category of tumor. Such tumors may be particularly susceptible to treatment because of the multitude of neoantigens which they produce.
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