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    Network-based approaches to identifying significant molecules based on high-throughput data analysis
    5.
    发明申请
    Network-based approaches to identifying significant molecules based on high-throughput data analysis 审中-公开
    基于网络的基于高通量数据分析识别重要分子的方法

    公开(公告)号：US20070174019A1

    公开(公告)日：2007-07-26

    申请号：US11264259

    申请日：2005-10-31

    申请人： Aditya Vailaya ,  Allan Kuchinsky ,  Euan Ashley ,  Jennifer King ,  Rossella Ferrara ,  Thomas Quertermous

    发明人： Aditya Vailaya ,  Allan Kuchinsky ,  Euan Ashley ,  Jennifer King ,  Rossella Ferrara ,  Thomas Quertermous

    IPC分类号： G06F17/18

    CPC分类号： G16B5/00 ,  G16B20/00

    摘要： Methods, systems and computer readable media for network-based identification of significant molecules, for which at least one biological network is provided to include significant molecules to be identified. A node in the network is identified. A member-specific sub-network containing nodes connected to the identified node is identified for L levels of nearest neighbors, wherein L is a positive integer, and a connectivity score is calculated for the molecule represented by the identified node based on significance scores of each node contained in the member-specific sub-network. These steps are repeated for other nodes in the network. Methods, systems and computer readable media for network-based identification of significant molecules, for which at least one biological network is provided to include significant molecules to be identified, a data set including data values characterizing molecules experimented on is provided, and an interesting list of molecules is provided as a subset of the molecules from the dataset, the interesting list including significance scores for the molecules in the list. Such identification includes identifying a node in the network; identifying a member-specific sub-network containing nodes connected to the identified node for L levels of nearest neighbors, wherein L is a positive integer; extracting the member-specific sub-network from the network; and repeating these steps for each of the other nodes in the network that corresponds to a molecule in the interesting list.

    摘要翻译： 用于基于网络识别重要分子的方法，系统和计算机可读介质，其中提供至少一个生物网络以包括要识别的重要分子。 识别网络中的节点。 针对L个最近邻的L个级别识别包含连接到所识别节点的节点的成员特定子网络，其中L是正整数，并且基于由所识别的节点表示的分子计算连通性得分，基于每个 节点包含在成员特定子网中。 对网络中的其他节点重复这些步骤。 提供用于基于网络识别显着分子的方法，系统和计算机可读介质，其中提供至少一个生物网络以包括要识别的重要分子，提供包括表征实验分子的数据值的数据集，以及有趣的列表 的分子作为来自数据集的分子的子集提供，有趣的列表包括列表中分子的显着性得分。 这种识别包括识别网络中的节点; 识别包含连接到所识别的节点的节点的成员特定子网络用于最近邻的L级，其中L是正整数; 从网络中提取成员专用子网; 并且对于与有趣列表中的分子相对应的网络中的每个其他节点重复这些步骤。

    Systems, methods and computer readable media for performing a domain-specific metasearch, and visualizing search results therefrom
    6.
    发明申请
    Systems, methods and computer readable media for performing a domain-specific metasearch, and visualizing search results therefrom 失效
    用于执行域特定元搜索的系统，方法和计算机可读介质，以及从其中可视化搜索结果

    公开(公告)号：US20050278321A1

    公开(公告)日：2005-12-15

    申请号：US11166696

    申请日：2005-06-24

    申请人： Aditya Vailaya ,  Allan Kuchinsky ,  Robert Kincaid

    发明人： Aditya Vailaya ,  Allan Kuchinsky ,  Robert Kincaid

    IPC分类号： G06F7/00 ,  G06F19/28

    CPC分类号： G06F17/30864 ,  G06F17/30991 ,  G06F19/28 ,  Y10S707/99935 ,  Y10S707/99943

    摘要： Systems, methods and computer readable media for performing a domain-specific metasearch, and obtaining search results therefrom. A metasearch engine capable of accessing generic, web-based search engines and domain-relevant search engines is provided to receive one or more queries inputted by a user, and to search for documents on at least one the generic, web-based search engines and domain-relevant search engines which are relevant to the queries. Raw data search results are fetched in the form of text documents. Relevant data including semantic information are extracted from the raw data search results, and converted to a local format. The relevant data having been converted to the local format may be visualized as a network visualization. Additionally or alternatively, the raw data search results may be ranked and/or filtered based on the linking of the relevant data. Visualization of the raw data having been ranked and/or filtered may be performed in addition to, or alternative to visualization of the network.

    摘要翻译： 用于执行域特定元搜索的系统，方法和计算机可读介质，以及从其获得搜索结果。 提供了能够访问通用的，基于网络的搜索引擎和域相关搜索引擎的元搜索引擎，用于接收用户输入的一个或多个查询，并且在至少一个通用的基于web的搜索引擎上搜索文档，以及 与查询相关的域相关搜索引擎。 原始数据搜索结果以文本文档的形式提取。 从原始数据搜索结果中提取包括语义信息的相关数据，并将其转换为本地格式。 已经转换为本地格式的相关数据可以被可视化为网络可视化。 另外或替代地，可以基于相关数据的链接对原始数据搜索结果进行排名和/或过滤。 已经排序和/或过滤的原始数据的可视化可以除了网络的可视化之外或替代以进行。

    Methods and systems for extension, exploration, refinement, and analysis of biological networks
    8.
    发明申请
    Methods and systems for extension, exploration, refinement, and analysis of biological networks 审中-公开
    生物网络的扩展，探索，细化和分析的方法和系统

    公开(公告)号：US20050197783A1

    公开(公告)日：2005-09-08

    申请号：US10794341

    申请日：2004-03-04

    申请人： Allan Kuchinsky ,  Aditya Vailaya ,  Annette Adler

    发明人： Allan Kuchinsky ,  Aditya Vailaya ,  Annette Adler

    IPC分类号： C12Q1/00 ,  G01N33/48 ,  G01N33/50 ,  G06F19/00

    CPC分类号： G16B5/00 ,  G16B25/00 ,  G16B40/00

    摘要： Systems, methods and recordable media for facilitating user-guidance of computational analysis and knowledge extraction tools for use with biological data for disambiguation and determination of causation in representations of the data. Systems, methods, tools and computer readable media for user-guided expansion of biological networks and manipulations of the same. Tools for qualitative simulation of network models, for identifying interactions between multiple networks and form maintaining knowledge about multiple alternative biological networks. Combinations of portions of networks may be constructed to provide optimal networks. Networks may be evaluated against experimental data and networks of interest may be identified based on experimental data.

    摘要翻译： 系统，方法和可记录介质，用于促进计算分析和知识提取工具的用户指导，以便与生物数据一起使用，以消除歧义和确定数据表示中的因果关系。 用于用户引导扩展生物网络的系统，方法，工具和计算机可读介质及其操作。 用于网络模型的定性模拟的工具，用于识别多个网络之间的交互并形成维护关于多个替代生物网络的知识。 可以构建网络的部分的组合以提供最佳网络。 可以根据实验数据评估网络，并且可以基于实验数据来识别感兴趣的网络。

    Indexing and searching product identifiers
    9.
    发明授权
    Indexing and searching product identifiers 有权
    索引和搜索产品标识符

    公开(公告)号：US08171013B2

    公开(公告)日：2012-05-01

    申请号：US13186395

    申请日：2011-07-19

    申请人： Aditya Vailaya ,  Jiang Wu ,  Manish Rathi ,  Kirk Chen

    发明人： Aditya Vailaya ,  Jiang Wu ,  Manish Rathi ,  Kirk Chen

    IPC分类号： G06F7/00 ,  G06F17/30

    CPC分类号： G06F17/30675

    摘要： A system, method and computer program product for indexing a product identifier and logical parts thereof includes receiving a product identifier; splitting the product identifier into logical parts; indexing the product identifier and the individual logical parts in an index; and storing the index, wherein the index is created by encoding the product identifier and the individual logical parts of the product identifier into separate fields of a document, wherein different weights are assigned to separate fields based on the field types such as product identifier or logical parts of the product identifier field, wherein different weights are assigned to words based on the word types including bi-words, wherein the fields and weights are encoded to word positions in the document, wherein the weights affect a score generated upon performing a query using the index. A system, method and computer program product for processing a search query is also presented.

    摘要翻译： 一种用于索引产品标识符及其逻辑部分的系统，方法和计算机程序产品包括接收产品标识符; 将产品标识符分解为逻辑部分; 在索引中索引产品标识符和各个逻辑部分; 并且存储索引，其中通过将产品标识符和产品标识符的各个逻辑部分编码到文档的单独字段中来创建索引，其中基于诸如产品标识符或逻辑的字段类型将不同的权重分配给单独的字段 产品标识符字段的部分，其中基于包括双字的单词类型将不同权重分配给单词，其中字段和权重被编码到文档中的单词位置，其中权重影响在执行查询时产生的分数 指数。 还提出了一种用于处理搜索查询的系统，方法和计算机程序产品。

    Methods, systems, and program products for generating multidimensional comparisons
    10.
    发明授权
    Methods, systems, and program products for generating multidimensional comparisons 有权
    用于生成多维比较的方法，系统和程序产品

    公开(公告)号：US08165925B2

    公开(公告)日：2012-04-24

    申请号：US12062393

    申请日：2008-04-03

    申请人： Aditya Vailaya ,  Jiang Wu ,  Vipin Jain ,  Peter S. S. Wang ,  Robert Lincoln Lewis, Jr.

    发明人： Aditya Vailaya ,  Jiang Wu ,  Vipin Jain ,  Peter S. S. Wang ,  Robert Lincoln Lewis, Jr.

    IPC分类号： G06Q30/00

    CPC分类号： G06Q30/02 ,  G06Q10/10 ,  G06Q30/0241 ,  G06Q30/0601 ,  G06Q30/0625 ,  G06Q30/0627 ,  G06Q30/0629 ,  G06Q30/0641 ,  G06Q30/0643

    摘要： A method for performing an action based on user interaction with a graphical presentation, according to one embodiment. In use, output data is generated corresponding to a multidimensional presentation of graphical representations of two or more consumer products in relation to each other. Additionally, positions of the graphical representations of the consumer products relative to each other are based on multiple attributes of the products. Further, none of the dimensions correlates to a side by side ordering of the consumer products. Further still, a user selection of one or more of the consumer products is received. Also, a transaction is performed based on additional input received from the user. Additional embodiments are also presented.

    摘要翻译： 根据一个实施例的用于基于与图形呈现的用户交互来执行动作的方法。 在使用中，相对于彼此相关的两个或多个消费品的图形表示的多维呈现产生输出数据。 此外，消费品相对于彼此的图形表示的位置基于产品的多个属性。 此外，没有一个尺寸与消费品的并排排序相关。 此外，接收用户对一个或多个消费者产品的选择。 而且，基于从用户接收的附加输入执行交易。 还提供了另外的实施例。