Systems and methods for monitoring the amplification of DNA

    公开(公告)号:US09777318B2

    公开(公告)日:2017-10-03

    申请号:US14697036

    申请日:2015-04-27

    Inventor: Kenton C. Hasson

    CPC classification number: C12Q1/686

    Abstract: A system and method for amplifying and detecting nucleic acids are disclosed. In one embodiment, the system includes: a microfluidic device comprising a channel for receiving a sample of solution containing real-time PCR reagents; a temperature control system configured to cycle the temperature of the sample; an excitation source for illuminating the sample; a fiber optic probe comprising (i) an optical fiber having a distal end and a proximal end and (ii) a probe head connected to the distal end of the optical fiber and positioned between the distal end of the optical fiber and the channel; and a detector configured to detect emissions exiting the proximal end of the optical fiber.

    Detection of Neighboring Variants
    39.
    发明申请
    Detection of Neighboring Variants 审中-公开
    相邻变体的检测

    公开(公告)号:US20170009279A1

    公开(公告)日:2017-01-12

    申请号:US15269362

    申请日:2016-09-19

    Abstract: The present invention relates to methods, kits, probes, and systems for distinguishing between nucleotide variants that are close in proximity on a gene. The methods, kits, probes, and systems can include the use of a small amplicon assay in combination with two unlabeled probes in a high resolution thermal melting analysis of a biological sample containing a locus of interest in order to discern between disease-causing and benign variants that are close in proximity on a gene within the biological sample. The present invention also relates to method of detecting a disease in a patient based on the patient's genotype by determining whether the patient has a disease-causing variant at a locus of interest. The signature melt curves produced by the unlabeled probe tests can be analyzed using HRMA software to distinguish between disease-causing and benign variants that are close in proximity on a gene within the biological sample.

    Abstract translation: 本发明涉及用于区分在基因附近接近的核苷酸变体的方法,试剂盒,探针和系统。 方法,试剂盒,探针和系统可以包括在含有感兴趣的基因座的生物样品的高分辨率热熔解分析中与两个未标记的探针组合使用小的扩增子测定,以鉴别致病和良性 在生物样品中的基因附近接近的变体。 本发明还涉及通过确定患者是否在感兴趣的场所具有致病变体,基于患者的基因型来检测患者的疾病的方法。 可以使用HRMA软件分析由未标记的探针测试产生的标记融合曲线,以区分生物样品中基因附近接近的致病因子和良性变体。

    HIGH-RESOLUTION MELTING ANALYSIS
    40.
    发明申请
    HIGH-RESOLUTION MELTING ANALYSIS 审中-公开
    高分辨率熔融分析

    公开(公告)号:US20160342736A1

    公开(公告)日:2016-11-24

    申请号:US15076217

    申请日:2016-03-21

    Abstract: The present invention relates to methods and systems for the analysis of the dissociation behavior of nucleic acids and the identification of nucleic acids. Methods and systems are disclosed for identifying a nucleic acid in a sample including an unknown nucleic acid and for detecting a single nucleotide polymorphism in a nucleic acid in a sample. Methods and systems are disclosed for identification of a nucleic acid in a biological sample including at least one unknown nucleic acid by fitting denaturation data including measurements of a quantifiable physical change of the sample at a plurality of independent sample property points to a function to determine an intrinsic physical value and to obtain an estimated physical change function, and identifying the nucleic acid in the biological sample by comparing the intrinsic physical value for at least one unknown nucleic acid to an intrinsic physical value for a known nucleic acid.

    Abstract translation: 本发明涉及用于分析核酸的解离行为和核酸鉴定的方法和系统。 公开了用于鉴定样品中的核酸的方法和系统,所述样品包括未知核酸并用于检测样品中核酸中的单核苷酸多态性。 公开了用于通过将包括在多个独立样品特性点上的样品的可量化物理变化的测量的变性数据拟合到确定一个或多个独立样品特性点的函数来鉴定包含至少一种未知核酸的生物样品中的核酸的方法和系统 并且获得估计的物理变化功能,以及通过将至少一种未知核酸的固有物理值与已知核酸的固有物理值进行比较来鉴定生物样品中的核酸。

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