METHOD FOR MEASURING A CHANGE IN AN INDIVIDUAL'S IMMUNOREPERTOIRE
    1.
    发明申请
    METHOD FOR MEASURING A CHANGE IN AN INDIVIDUAL'S IMMUNOREPERTOIRE 审中-公开
    用于测量个体免疫球蛋白变化的方法

    公开(公告)号:WO2016144776A1

    公开(公告)日:2016-09-15

    申请号:PCT/US2016/020939

    申请日:2016-03-04

    Inventor: HAN, Jian

    CPC classification number: G06F19/20

    Abstract: The present invention pertains to methods for determining the change in the immune repertoire of an individual suffering from disease or undergoing therapy for the treatment of a disease. The methods use the difference between the change in the level of immune cell diversity seen in an individual before, during or after a health event to determine the effect of the disease, or the effect of a treatment regime, on the individual. The difference in the level of immune cell diversity is referred to as the Delta Index and is defined as the quantitative and qualitative change (gain or loss of clones) of an individual's most dynamic immune cells over time.

    Abstract translation: 本发明涉及用于确定患有疾病或正在接受治疗疾病的个体的免疫谱的变化的方法。 该方法使用在健康事件之前,期间或之后在个体中观察到的免疫细胞多样性水平的变化之间的差异,以确定疾病的效果或治疗方案对个体的影响。 免疫细胞多样性水平的差异被称为三角洲指数,并被定义为个体最具动态免疫细胞随时间的定量和定性变化(克隆的增益或损失)。

    METHOD FOR INCREASING ACCURACY IN QUANTITATIVE DETECTION OF POLYNUCLEOTIDES
    2.
    发明申请
    METHOD FOR INCREASING ACCURACY IN QUANTITATIVE DETECTION OF POLYNUCLEOTIDES 审中-公开
    增加多核苷酸定量检测精度的方法

    公开(公告)号:WO2013173394A2

    公开(公告)日:2013-11-21

    申请号:PCT/US2013/041031

    申请日:2013-05-14

    Abstract: Disclosed is a method for improving the sensitivity and accuracy of quantitative detection of polynucleotides in a sample, such a clinical specimen, by a method that utilizes a two- or three-step process of tagging/labeling target molecules and adding an adapter sequence for adding a universal primer for efficient amplification of targets while decreasing target amplification bias. When combined with the step of statistically correcting for sequencing errors, the method can significantly increase the accuracy of quantitative detection of polynucleotides in a sample.

    Abstract translation: 公开了通过利用标记/标记靶分子的两步或三步法并添加用于添加的衔接子序列的方法来提高样品(例如临床样品)中多核苷酸的定量检测的灵敏度和准确度的方法 一种通用引物,用于有效放大靶标,同时降低靶标扩增偏倚。 当与统计校正测序误差的步骤结合时,该方法可以显着提高样品中多核苷酸的定量检测的准确性。

    MULTIPLEX PYROSEQUENCING USING NON-INTERFERING NOISE-CANCELING POLYNUCLEOTIDE IDENTIFICATION TAGS

    公开(公告)号:WO2014047646A9

    公开(公告)日:2014-03-27

    申请号:PCT/US2013/061460

    申请日:2013-09-24

    Abstract: The present disclosure generally pertains to a multiplex method for analyzing samples comprising using polynucleotide amplification to produce amplified products wherein one or more target sequences are tagged with a non-interfering, non- canceling target-specific polynucleotide identification tag, pyrosequencing the amplified products through the non-canceling target-specific polynucleotide identification tag sequence to detect the presence of one or more specific polynucleotide identification tags. The presence of a specific polynucleotide identification tag being correlated with the presence of a specific target sequence.

    METHOD FOR INCREASING ACCURACY IN QUANTITATIVE DETECTION OF POLYNUCLEOTIDES
    6.
    发明申请
    METHOD FOR INCREASING ACCURACY IN QUANTITATIVE DETECTION OF POLYNUCLEOTIDES 审中-公开
    增加多核苷酸定量检测精度的方法

    公开(公告)号:WO2013173394A3

    公开(公告)日:2014-01-23

    申请号:PCT/US2013041031

    申请日:2013-05-14

    Abstract: Disclosed is a method for improving the sensitivity and accuracy of quantitative detection of polynucleotides in a sample, such a clinical specimen, by a method that utilizes a two- or three-step process of tagging/labeling target molecules and adding an adapter sequence for adding a universal primer for efficient amplification of targets while decreasing target amplification bias. When combined with the step of statistically correcting for sequencing errors, the method can significantly increase the accuracy of quantitative detection of polynucleotides in a sample.

    Abstract translation: 公开了通过利用标记/标记靶分子的两步或三步法并添加用于添加的衔接子序列的方法来提高样品(例如临床样品)中多核苷酸的定量检测的灵敏度和准确度的方法 一种通用引物,用于有效放大靶标,同时降低靶标扩增偏倚。 当与统计校正测序误差的步骤结合时,该方法可以显着提高样品中多核苷酸的定量检测的准确性。

    METHOD FOR IDENTIFYING DISEASE-ASSOCIATED CDR3 PATTERNS IN AN IMMUNE REPERTOIRE
    7.
    发明申请
    METHOD FOR IDENTIFYING DISEASE-ASSOCIATED CDR3 PATTERNS IN AN IMMUNE REPERTOIRE 审中-公开
    用于识别免疫球蛋白相关CDR3模式的方法

    公开(公告)号:WO2016144996A1

    公开(公告)日:2016-09-15

    申请号:PCT/US2016/021430

    申请日:2016-03-09

    Inventor: HAN, Jian

    Abstract: The present disclosure generally pertains to a method for developing diagnostic tests that are based on the immune response and the resulting immune repertoire. The presently disclosed method increases the signal and reduces the background to allow the identification of shared CDR3s that can be used to produce a disease signature. The presently disclosed method may be used to develop a diagnostic test for different diseases including, but not limited to, cancer, autoimmune disease, inflammatory disease and infectious disease.

    Abstract translation: 本公开通常涉及用于开发基于免疫应答和所得免疫谱的诊断测试的方法。 目前公开的方法增加了信号并减少了背景以允许识别可用于产生疾病特征的共享CDR3。 本公开的方法可用于开发不同疾病的诊断测试,包括但不限于癌症,自身免疫性疾病,炎性疾病和感染性疾病。

    METHOD FOR EVALUATING AN IMMUNOREPERTOIRE
    8.
    发明申请
    METHOD FOR EVALUATING AN IMMUNOREPERTOIRE 审中-公开
    评估免疫球蛋白的方法

    公开(公告)号:WO2014124451A1

    公开(公告)日:2014-08-14

    申请号:PCT/US2014/015841

    申请日:2014-02-11

    Abstract: Disclosed is a method for amplifying RNA from T and B-cell populations and using the amplified RNA products to evaluate the possible correlation between a normal or abnormal immune response and the development of a disease such as an autoimmune disease, cancer, diabetes, or heart disease.

    Abstract translation: 公开了一种从T和B细胞群体中扩增RNA的方法,并使用扩增的RNA产物来评估正常或异常免疫应答与疾病如自身免疫疾病,癌症,糖尿病或心脏发育之间可能的相关性 疾病。

    MULTIPLEX PYROSEQUENCING USING NON-INTERFERING NOISE CANCELLING POLYNUCLEOTIDE IDENTIFICATION TAGS
    9.
    发明申请
    MULTIPLEX PYROSEQUENCING USING NON-INTERFERING NOISE CANCELLING POLYNUCLEOTIDE IDENTIFICATION TAGS 审中-公开
    使用非干扰噪声消除多核苷酸鉴定标签进行多重选择

    公开(公告)号:WO2014047646A1

    公开(公告)日:2014-03-27

    申请号:PCT/US2013/061460

    申请日:2013-09-24

    Abstract: The present disclosure generally pertains to a multiplex method for analyzing samples comprising using polynucleotide amplification to produce amplified products wherein one or more target sequences are tagged with a non-interfering, non- canceling target-specific polynucleotide identification tag, pyrosequencing the amplified products through the non-canceling target-specific polynucleotide identification tag sequence to detect the presence of one or more specific polynucleotide identification tags. The presence of a specific polynucleotide identification tag being correlated with the presence of a specific target sequence.

    Abstract translation: 本公开通常涉及用于分析样品的多重方法,其包括使用多核苷酸扩增产生扩增产物,其中一个或多个靶序列用非干扰的,非抵消的靶特异性多核苷酸鉴定标签进行标记,通过所述扩增产物 非取消靶特异性多核苷酸鉴定标签序列,以检测一个或多个特异性多核苷酸鉴定标签的存在。 特定多核苷酸识别标签的存在与特定靶序列的存在相关。

    POLYMERASE PREFERENCE INDEX
    10.
    发明申请
    POLYMERASE PREFERENCE INDEX 审中-公开
    聚合物优先索引

    公开(公告)号:WO2012100089A1

    公开(公告)日:2012-07-26

    申请号:PCT/US2012/021917

    申请日:2012-01-19

    Inventor: HAN, Jian

    CPC classification number: G06F19/20 G06F19/22 G06F19/28

    Abstract: Disclosed is a method for calculating a Polymerase Preference Index (PPI) for potential primers for DNA sequencing and/or amplification, and thereby increasing the efficiency of DNA sequencing and/or amplification performed using primers selected according to their PPI number.

    Abstract translation: 公开了一种用于计算用于DNA测序和/或扩增的潜在引物的聚合酶偏好指数(PPI)的方法,从而使用根据其PPI数选择的引物进行DNA测序和/或扩增的效率。

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