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公开(公告)号：US08124844B2
公开(公告)日：2012-02-28
申请号：US11980366
申请日：2007-10-31
Applicant: Thomas J. La Rosa , David K. Kovalic , Yihua Zhou , Yongwei Cao , Mark S. Abad , Scott E. Andersen , Robert E. Buehler , Joseph R. Byrum , Nordine Cheikh , Timothy W. Conner , Brian E. Coombs , Stanton B. Dotson , Patrice Dubois , Michael D. Edgerton , Dane K. Fisher , Kristine J. Hardeman , Gregory J. Heck , Gregory J. Hinkle , Raghunath V. Lalgudi , Jingdong Liu , Linda L. Lutfiyya , Debbie A. Mahadeo , James D. Masucci , James D. McIninch , Philip W. Miller , Donald E. Nelson , Ming Peng , Thomas G. Ruff , Hridayabhiranjan Shukla , Joshua Stein , Michael D. Thompson , Kunsheng Wu
Inventor： Thomas J. La Rosa , David K. Kovalic , Yihua Zhou , Yongwei Cao , Mark S. Abad , Scott E. Andersen , Robert E. Buehler , Joseph R. Byrum , Nordine Cheikh , Timothy W. Conner , Brian E. Coombs , Stanton B. Dotson , Patrice Dubois , Michael D. Edgerton , Dane K. Fisher , Kristine J. Hardeman , Gregory J. Heck , Gregory J. Hinkle , Raghunath V. Lalgudi , Jingdong Liu , Linda L. Lutfiyya , Debbie A. Mahadeo , James D. Masucci , James D. McIninch , Philip W. Miller , Donald E. Nelson , Ming Peng , Thomas G. Ruff , Hridayabhiranjan Shukla , Joshua Stein , Michael D. Thompson , Kunsheng Wu
IPC: C12N15/00 , A01H5/00 , A01H1/00 , C07H21/04 , C07K14/415
Abstract: Polynucleotides useful for improvement of plants are provided. In particular, polynucleotide sequences are provided from plant sources. Polypeptides encoded by the polynucleotide sequences are also provided. The disclosed polynucleotides and polypeptides find use in production of transgenic plants to produce plants having improved properties.
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2.发明申请Emericella Nidulans Genome Sequence On Computer Readable Medium and Uses Thereof 审中-公开Emericella Nidulans基因组序列在计算机上可读介质及其用途公开(公告)号：US20090119022A1
公开(公告)日：2009-05-07
申请号：US12336504
申请日：2008-12-16
Applicant: William E. Timberlake , Yongwei Cao , Gregory J. Hinkle , James D. McIninch , Jaehyuk Yu , Azita Ghodssi
Inventor： William E. Timberlake , Yongwei Cao , Gregory J. Hinkle , James D. McIninch , Jaehyuk Yu , Azita Ghodssi
IPC: G01N33/48
CPC classification number: C12Q1/6895 , G16B25/00 , G16B30/00
Abstract: The present invention relates to nucleic acid sequences from the filamentous fungus, Emericella nidulans (Aspergillus nidulans) and, in particular, to genomic DNA sequences. The invention encompasses nucleic acid molecules present in non-coding regions as well as nucleic acid molecules that encode proteins and fragments of proteins. In addition, proteins and fragments of proteins so encoded and antibodies capable of binding the proteins are encompassed by the present invention. The invention also encompasses oligonucleotides including primers, e.g. useful for amplifying nucleic acid molecules, and collections of nucleic acid molecules and oligonucleotides, e.g. in microarrays. The invention also provides constructs and transgenic cells and organisms comprising nucleic acid molecules of the invention. The invention also relates to methods of using the disclosed nucleic acid molecules, oligonucleotides, proteins, fragments of proteins, and antibodies, for example, for gene identification and analysis, and preparation of constructs and transgenic cells and organisms.
Abstract translation: 本发明涉及来自丝状真菌，构巢构象（构巢曲霉），特别是基因组DNA序列的核酸序列。 本发明包括非编码区中存在的核酸分子以及编码蛋白质和蛋白质片段的核酸分子。 此外，蛋白质和如此编码的蛋白质的片段以及能够结合蛋白质的抗体包括在本发明中。 本发明还包括寡核苷酸，包括引物，例如 可用于扩增核酸分子，以及核酸分子和寡核苷酸的集合，例如。 在微阵列 本发明还提供包含本发明的核酸分子的构建体和转基因细胞和生物体。 本发明还涉及使用所公开的核酸分子，寡核苷酸，蛋白质，蛋白质片段和抗体的方法，例如用于基因鉴定和分析，以及构建体和转基因细胞和生物体的制备。
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公开(公告)号：US20130340112A1
公开(公告)日：2013-12-19
申请号：US11980439
申请日：2007-10-31
Applicant: Andrey A. Boukharov , Yongwei Cao , David K. Kovalic , Jingdong Liu , James D. McIninch , Wei Wu
Inventor： Andrey A. Boukharov , Yongwei Cao , David K. Kovalic , Jingdong Liu , James D. McIninch , Wei Wu
CPC classification number: C12Q1/6874 , C07K14/415 , C12N15/8241
Abstract: The present invention is in the field of plant biochemistry and genetics. More specifically the invention relates to nucleic acid molecules from plant cells, in particular, genomic DNA sequences from rice plants and nucleic acid molecules that contain markers, in particular, single nucleotide polymorphism (SNP) and repetitive element markers. In addition, the present invention provides nucleic acid molecules having regulatory elements or encoding proteins or fragments thereof. The invention also relates to proteins and fragments of proteins so encoded and antibodies capable of binding the proteins. The invention also relates to methods of using the nucleic acid molecules, markers, repetitive elements and fragments of repetitive elements, regulatory elements, proteins and fragments of proteins, and antibodies, for example for genome mapping, gene identification and analysis, plant breeding, preparation of constructs for use in plant gene expression, and transgenic plants.
Abstract translation: 本发明在植物生物化学和遗传学领域。 更具体地，本发明涉及来自植物细胞的核酸分子，特别是来自水稻植物的基因组DNA序列和含有标志物，特别是单核苷酸多态性（SNP）和重复元件标记的核酸分子。 此外，本发明提供具有调节元件或编码蛋白质或其片段的核酸分子。 本发明还涉及如此编码的蛋白质和蛋白质的片段以及能够结合蛋白质的抗体。 本发明还涉及使用核酸分子，标记，重复元件和重复元件的片段，调节元件，蛋白质和蛋白质片段和抗体的方法，例如用于基因组作图，基因鉴定和分析，植物育种，制备 用于植物基因表达的构建体和转基因植物。
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公开(公告)号：US07365185B2
公开(公告)日：2008-04-29
申请号：US09815264
申请日：2001-03-23
Applicant: Andrey A. Boukharov , Yongwei Cao , Stanton B. Dotson , Jeffrey M. Koshi , David K. Kovalic , Jingdong Liu , James D. McIninch , Wei Wu
Inventor： Andrey A. Boukharov , Yongwei Cao , Stanton B. Dotson , Jeffrey M. Koshi , David K. Kovalic , Jingdong Liu , James D. McIninch , Wei Wu
CPC classification number: C12N15/8216 , C07K14/415 , C12N15/8227
Abstract: The present invention discloses rice genomic promoter sequences. The promoters are particularly suited for use in rice and other cereal crops. Methods of modifying, producing, and using the promoters are also disclosed. The invention further discloses compositions, transformed host cells, transgenic plants, and seeds containing the rice genomic promoter sequences, and methods for preparing and using the same.
Abstract translation: 本发明公开了水稻基因组启动子序列。 促进剂特别适用于水稻和其他谷类作物。 还公开了改性，制备和使用促进剂的方法。 本发明还公开了组合物，转化的宿主细胞，转基因植物和含有水稻基因组启动子序列的种子，以及其制备和使用方法。
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Patent Agency Ranking
公开(公告)号：US07790958B2
公开(公告)日：2010-09-07
申请号：US11595983
申请日：2006-11-13
Applicant: Andrey A. Boukharov , Yongwei Cao , Stanton B. Dotson , Jeffrey M. Koshi , David K. Kovalic , Jingdong Liu , James D. McIninch , Wei Wu
Inventor： Andrey A. Boukharov , Yongwei Cao , Stanton B. Dotson , Jeffrey M. Koshi , David K. Kovalic , Jingdong Liu , James D. McIninch , Wei Wu
CPC classification number: C12N15/8216 , C07K14/415 , C12N15/8227
Abstract: The present invention discloses rice genomic promoter sequences. The promoters are particularly suited for use in rice and other cereal crops. Methods of modifying, producing, and using the promoters are also disclosed. The invention further discloses compositions, transformed host cells, transgenic plants, and seeds containing the rice genomic promoter sequences, and methods for preparing and using the same.
Abstract translation: 本发明公开了水稻基因组启动子序列。 促进剂特别适用于水稻和其他谷类作物。 还公开了改性，制备和使用促进剂的方法。 本发明还公开了组合物，转化的宿主细胞，转基因植物和含有水稻基因组启动子序列的种子，以及其制备和使用方法。
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公开(公告)号：US09487797B2
公开(公告)日：2016-11-08
申请号：US13373133
申请日：2011-11-04
Applicant: Andrey A. Boukharov , Yongwei Cao , Stanton B. Dotson , Jeffrey M. Koshi , David K. Kovalic , Jingdong Liu , James D. McIninch , Wei Wu
Inventor： Andrey A. Boukharov , Yongwei Cao , Stanton B. Dotson , Jeffrey M. Koshi , David K. Kovalic , Jingdong Liu , James D. McIninch , Wei Wu
IPC: C12N15/82 , C07K14/415
CPC classification number: C12N15/8286 , C07K14/415 , C12N15/8227 , C12N15/8243 , C12N15/8247 , C12N15/8274 , C12N15/8279
Abstract: The present invention discloses rice genomic promoter sequences. The promoters are particularly suited for use in rice and other cereal crops. Methods of modifying, producing, and using the promoters are also disclosed. The invention further discloses compositions, transformed host cells, transgenic plants, and seeds containing the rice genomic promoter sequences, and methods for preparing and using the same.
Abstract translation: 本发明公开了水稻基因组启动子序列。 促进剂特别适用于水稻和其他谷类作物。 还公开了改性，制备和使用促进剂的方法。 本发明还公开了组合物，转化的宿主细胞，转基因植物和含有水稻基因组启动子序列的种子，以及其制备和使用方法。
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公开(公告)号：US20140130204A1
公开(公告)日：2014-05-08
申请号：US13373133
申请日：2011-11-04
Applicant: Andrey A. Boukharov , Yongwei Cao , Stanton B. Dotson , Jeffrey M. Koshi , David K. Kovalic , Jingdong Liu , James D. McIninch , Wei Wu
Inventor： Andrey A. Boukharov , Yongwei Cao , Stanton B. Dotson , Jeffrey M. Koshi , David K. Kovalic , Jingdong Liu , James D. McIninch , Wei Wu
IPC: C12N15/82
CPC classification number: C12N15/8286 , C07K14/415 , C12N15/8227 , C12N15/8243 , C12N15/8247 , C12N15/8274 , C12N15/8279
Abstract: The present invention discloses rice genomic promoter sequences. The promoters are particularly suited for use in rice and other cereal crops. Methods of modifying, producing, and using the promoters are also disclosed. The invention further discloses compositions, transformed host cells, transgenic plants, and seeds containing the rice genomic promoter sequences, and methods for preparing and using the same.
Abstract translation: 本发明公开了水稻基因组启动子序列。 促进剂特别适用于水稻和其他谷类作物。 还公开了改性，制备和使用促进剂的方法。 本发明还公开了组合物，转化的宿主细胞，转基因植物和含有水稻基因组启动子序列的种子，以及其制备和使用方法。
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8.发明申请Nucleic acid molecules and other molecules associated with plants and uses thereof for plant improvement 有权与植物相关的核酸分子和其他分子及其用于植物改良的用途公开(公告)号：US20090217414A1
公开(公告)日：2009-08-27
申请号：US11980366
申请日：2007-10-31
Applicant: Thomas J. La Rosa , David K. Kovalic , Yihua Zhou , Yongwei Cao , Mark S. Abad , Scott E. Andersen , Robert E. Buehler , Joseph R. Byrum , Nordine Cheikh , Timothy W. Conner , Brian E. Coombs , Stanton B. Dotson , Patrice Dubois , Michael D. Edgerton , Dane K. Fisher , Kristine J. Hardeman , Gregory J. Heck , Gregory J. Hinkle , Raghunath V. Lalgudi , Jingdong Liu , Linda L. Lutfiyya , Debbie A. Mahadeo , James D. Masucci , James D. McIninch , Philip W. Miller , Donald E. Nelson , Ming Peng , Thomas G. Ruff , Hridayabhiranjan Shukla , Joshua Stein , Michael D. Thompson , Kunsheng Wu
Inventor： Thomas J. La Rosa , David K. Kovalic , Yihua Zhou , Yongwei Cao , Mark S. Abad , Scott E. Andersen , Robert E. Buehler , Joseph R. Byrum , Nordine Cheikh , Timothy W. Conner , Brian E. Coombs , Stanton B. Dotson , Patrice Dubois , Michael D. Edgerton , Dane K. Fisher , Kristine J. Hardeman , Gregory J. Heck , Gregory J. Hinkle , Raghunath V. Lalgudi , Jingdong Liu , Linda L. Lutfiyya , Debbie A. Mahadeo , James D. Masucci , James D. McIninch , Philip W. Miller , Donald E. Nelson , Ming Peng , Thomas G. Ruff , Hridayabhiranjan Shukla , Joshua Stein , Michael D. Thompson , Kunsheng Wu
CPC classification number: C07H21/04 , C07K14/415 , C12N15/8261 , Y02A40/146
Abstract: Polynucleotides useful for improvement of plants are provided. In particular, polynucleotide sequences are provided from plant sources. Polypeptides encoded by the polynucleotide sequences are also provided. The disclosed polynucleotides and polypeptides find use in production of transgenic plants to produce plants having improved properties.
Abstract translation: 提供了可用于改良植物的多核苷酸。 特别地，从植物来源提供多核苷酸序列。 还提供了由多核苷酸序列编码的多肽。 所公开的多核苷酸和多肽可用于生产转基因植物以产生具有改进性质的植物。
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公开(公告)号：US07444243B2
公开(公告)日：2008-10-28
申请号：US10775176
申请日：2004-02-11
Applicant: James D. McIninch
Inventor： James D. McIninch
IPC: G06F19/00
CPC classification number: G06F19/22
Abstract: The present invention is in the field of bioinformatics, particularly as it pertains to gene prediction. More specifically, the invention relates to the probabilistic analysis of nucleic acid sequences for the determination of coding features, including determination of state probabilities for each nucleotide in a nucleic acid sequence, determination of coding strand, determination of open reading frame extent, determination of insertion and deletion location, determination of exon location, and determination of protein sequence.
Abstract translation: 本发明涉及生物信息学领域，特别是涉及基因预测。 更具体地，本发明涉及用于确定编码特征的核酸序列的概率分析，包括确定核酸序列中每个核苷酸的状态概率，确定编码链，确定开放阅读框范围，确定插入 和删除位置，外显子位置的确定和蛋白质序列的测定。
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