公开(公告)号：US07903884B2

公开(公告)日：2011-03-08

申请号：US11039176

申请日：2005-01-20

Applicant: Kousaku Okubo ,  Takuro Tamura

Inventor： Kousaku Okubo ,  Takuro Tamura

IPC: G06K9/72 ,  G06F7/00

CPC classification number: G06F17/30716 ,  G06F17/2735

Abstract: A system for visibly processing observed information may include a configuration for systematizing information; a knowledge accumulation housing unit for storing knowledge accumulations from knowledge information belonging to each such configuration; an observed information receiving unit for receiving, from a user, information observed by the user; a fixed quantity processing unit for assigning a fixed quantity to a relationship between the observed information and the knowledge information belonging to each configuration for the knowledge accumulations; and a fixed quantity value display processing unit for displaying a numerical value of the fixed quantity, in accordance with the fixed quantity processing unit, together with its relationship with each configuration of the knowledge accumulations.

Abstract translation: 用于可视地处理观察信息的系统可以包括用于使信息系统化的配置; 知识积累住房单元，用于从属于每个这样的配置的知识信息中存储知识积累; 观察信息接收单元，用于从用户接收用户观察到的信息; 固定数量处理单元，用于将固定数量分配给观察信息与属于知识积累的每个配置的知识信息之间的关系; 以及固定量值显示处理单元，用于根据固定量处理单元与其与知识积累的每个配置的关系显示固定量的数值。

公开(公告)号：US07599801B2

公开(公告)日：2009-10-06

申请号：US10155631

申请日：2002-05-23

Applicant: Shigeru Yatsuzuka ,  Isamu Muto ,  Iwao Yamashita ,  Takuro Tamura

Inventor： Shigeru Yatsuzuka ,  Isamu Muto ,  Iwao Yamashita ,  Takuro Tamura

IPC: G06F19/00

CPC classification number: G06F19/28 ,  G06F19/22

Abstract: Provided is a means capable of high-speed analysis of a large-scale correlation among sequences of biopolymers and reutilization of any analyzed profile. A large-scale profile database 103 is provided with which the correlation among sequences of biopolymers can be analyzed at a high speed, and any profile can be extracted from the profile database.

公开(公告)号：US20090210787A1

公开(公告)日：2009-08-20

申请号：US12066973

申请日：2005-11-30

Applicant: Takuro Tamura

Inventor： Takuro Tamura

IPC: G06F17/24 ,  G06F15/16

CPC classification number: G06F16/9535 ,  G06F16/93

Abstract: The purpose of the present invention is, for large quantities of document data, to display on a document, in a uniform manner, characteristic information that the user wants to reference, without needing to perform work individually for each element or keyword, and to design an efficient utilization of the document data.In order to attain the above object, there is provided an information handling system 1 for generating and displaying characteristic information of a document within a displayed document data, having an input device 11, a display device 10, a memory device 7, an information display software 15 for reading document data, and a CPU 5, wherein the memory device 7 has a plurality of elements, an identifier specifying at least one element from within the plurality of elements, and characteristic information for each element, and a usable information storage unit 17 for describing their relationships with the identifier information of the elements, and the memory device also has program storage unit 14 for storing computer software executed by the CPU 5, a function wherein the system software 16 receives from the input device 11 a selection of an identifier extracted from the document data; a function for specifying, from the document data read by the information display software 15, the identifier involved in the selection; a function for searching for, from the usable information storage unit 17, characteristic information of an element based on the specified identifier; and a function for displaying on the display device 10, the searched out characteristic information, by burying the characteristic information in a vicinity of a location of the identifier within the document data or by overlapping the characteristic information on the document data.

Abstract translation: 本发明的目的是为了大量的文档数据，以均匀的方式在文档上显示用户想要参考的特征信息，而不需要为每个元素或关键字单独地执行工作，并且设计 有效利用文档数据。 为了实现上述目的，提供了一种信息处理系统1，用于在显示的文档数据内生成和显示文档的特征信息，具有输入装置11，显示装置10，存储装置7，信息显示 用于读取文档数据的软件15和CPU5，其中存储器件7具有多个元件，从多个元件中指定至少一个元件的标识符，以及每个元件的特征信息，以及可用信息存储单元 17，用于描述它们与元件的标识符信息的关系，并且存储器件还具有用于存储由CPU 5执行的计算机软件的程序存储单元14，其中系统软件16从输入设备11接收到一个 标识符从文档数据中提取; 用于从由信息显示软件15读取的文档数据中指定参与选择的标识符的功能; 从可用信息存储单元17基于指定的标识符搜索元素的特征信息的功能; 以及通过将特征信息埋在文档数据内的标识符的位置附近或通过将文档数据上的特征信息重叠来在显示装置10上显示所搜索的特征信息的功能。

公开(公告)号：US20090137505A1

公开(公告)日：2009-05-28

申请号：US11992261

申请日：2006-09-20

Applicant: Roberto Antonio Barrero ,  Takuro Tamura ,  Takashi Gojobori ,  Kazuho Ikeo ,  Tadashi Imanishi

Inventor： Roberto Antonio Barrero ,  Takuro Tamura ,  Takashi Gojobori ,  Kazuho Ikeo ,  Tadashi Imanishi

IPC: A61K31/7088 ,  G06F19/00 ,  G01N33/48 ,  C07H21/00

CPC classification number: C12Q1/6876 ,  C12N15/111 ,  C12N2310/14 ,  C12N2320/11 ,  C12N2330/10 ,  C12Q2600/158 ,  C12Q2600/178 ,  G16B15/00 ,  G16B20/00

Abstract: It is intended to identify or estimate miRNAs and one or more target genes (target mRNAs) targeted thereby.A method of predicting or identifying miRNAs and one or more target mRNAs targeted thereby, which comprises calculating the most stable secondary structures of double-stranded RNAs, which can be formed by all partial sequences in all of the subject mRNAs with miRNAs, and the secondary structure energies thereof to thereby search for all partial sequences capable of having stable structures through the binding of miRNAs to mRNAs, and then calculating the most stable secondary structure, which can be formed by a subject partial sequence or regions in the vicinity of the subject partial sequence with partial sequences of the concerned mRNA, and the secondary structure energy thereof to thereby determine whether or not the subject partial sequence of the concerned mRNA has a structure capable of interacting with the miRNA.

Abstract translation: 旨在鉴定或估计miRNA和靶向靶基因的一个或多个靶基因（靶mRNA）。 一种预测或鉴定miRNA和由此靶向的一种或多种靶mRNA的方法，其包括计算双链RNA的最稳定的二级结构，其可以由所有与miRNA相关的所有受试者mRNA中的所有部分序列形成，并且次级 结构能量，从而通过miRNA与mRNA的结合搜索能够具有稳定结构的所有部分序列，然后计算最稳定的二级结构，其可以由受试者部分序列或受试者部分附近的区域形成 序列与相关mRNA的部分序列及其二级结构能，从而确定相关mRNA的受试者部分序列是否具有能够与miRNA相互作用的结构。

公开(公告)号：US07315785B1

公开(公告)日：2008-01-01

申请号：US09890929

申请日：2000-11-17

Applicant: Yasuyuki Nozaki ,  Tsunehiko Watanabe ,  Ryo Nakashige ,  Takuro Tamura

Inventor： Yasuyuki Nozaki ,  Tsunehiko Watanabe ,  Ryo Nakashige ,  Takuro Tamura

IPC: G06F19/00

CPC classification number: G06F19/26 ,  G06F19/24 ,  G06K9/6219 ,  G06K9/6254

Abstract: The present invention represents a global state of branches in a whole dendrogram as well as detail of states of individual subtrees, to aid focusing of groupings and selection of a clustering method. The present invention selects a branch/subtree in a dendrogram displays the subtree on a separate window, replaces the subtree with an icon then restores the icon into the original subtree, and/or searches keywords contained in information of biopolymers in the subtree then highlight the locations of biopolymers containing the keywords in its information.

Abstract translation: 本发明表示整个树状图中的分支的全局状态以及各个子树的状态的细节，以帮助分组的聚焦和聚类方法的选择。 本发明选择树形图中的分支/子树在单独的窗口上显示子树，用图标替换子树，然后将图标恢复到原始子树中，和/或搜索包含在子树中的生物聚合物的信息中的关键字，然后突出显示 在其信息中含有关键词的生物聚合物的位置。

公开(公告)号：US07010430B2

公开(公告)日：2006-03-07

申请号：US09819179

申请日：2001-03-27

Applicant: Ryo Nakashige ,  Yasuyuki Nozaki ,  Takuro Tamura ,  Tsunehiko Watanabe

Inventor： Ryo Nakashige ,  Yasuyuki Nozaki ,  Takuro Tamura ,  Tsunehiko Watanabe

IPC: G06F17/11 ,  G06G7/58 ,  G06N7/00

CPC classification number: G06F19/26 ,  G06F19/20 ,  G06F19/24

Abstract: The present invention aims at providing a visual display which is useful in roughly understanding the state of groupings and changes, by comparing expression data of genes from two experiments based on expression data of one sample common to both experiments.In order to compare data of expression levels obtained from different experiments each using two types of samples, three types of expression levels are displayed in three-dimension as mediated by the data of the common sample used in both experiments. Specifically, expression level data for Samples A and B and expression level data for Samples A and C are combined and converted into single three-dimensional data and displayed as points inside a sphere. Alternatively, expression states of each gene to Samples A, B and C are mapped on a sphere with respect to a ratio between Sample A and Sample B and a ratio between Samples A and C, and displayed as distribution on the surface of the sphere. A clustering analysis is performed based on the distributed points inside or on the sphere, to visually understand the expression state of genes for the three types of samples. In addition, the expression level data displayed as points inside or on the sphere are linked as a line or a curve for each gene or for each gene group resulting from the clustering analysis, to visually understand the changes of expression states with time.

公开(公告)号：US06994965B2

公开(公告)日：2006-02-07

申请号：US09808407

申请日：2001-03-14

Applicant: Takuro Tamura ,  Noriyuki Yamamoto ,  Nobuaki Suzuki ,  Katsuya Mizuno

Inventor： Takuro Tamura ,  Noriyuki Yamamoto ,  Nobuaki Suzuki ,  Katsuya Mizuno

IPC: C12Q1/68 ,  C07H21/04

CPC classification number: G06F19/26 ,  G06F19/20

Abstract: In a method for verifying the accuracy of hybridization experiments in which a plurality of probe biopolymers are hybridized to sample biopolymers, information concerning the hybridization level for each of the probe biopolymers obtained from the hybridization experiment is displayed together with similarity scores representing the similarities between base sequences of the respective probe biopolymers.

公开(公告)号：US06690461B1

公开(公告)日：2004-02-10

申请号：US09806249

申请日：2001-03-27

Applicant: Takuro Tamura ,  Jyunji Yoshii ,  Katsuya Mizuno

Inventor： Takuro Tamura ,  Jyunji Yoshii ,  Katsuya Mizuno

IPC: G10J330

CPC classification number: G01N21/6452 ,  B01J2219/00527 ,  B01J2219/00529 ,  B01J2219/00585 ,  B01J2219/00596 ,  B01J2219/00605 ,  B01J2219/00608 ,  B01J2219/00612 ,  B01J2219/00659 ,  B01J2219/00707 ,  B01J2219/00722 ,  C12Q1/6837 ,  C40B40/06 ,  C12Q2545/101

Abstract: A method for displaying microarray information by which unknown but useful information is extracted from a mass amount of sample information obtained with microarrays. Luminescent intensity information of sample spots obtained with the microarrays is standardized for each microarray and displayed as a graph as a difference from the standardized luminescent intensity of a sample spot of interest. Accordingly, information can be compared without being influenced by a difference of experiment status between the microarrays or a difference of physical properties between the samples. A three-dimensional graph is displayed by sorting the set of samples and the set of microarrays to which the sample spots belong, under predetermined conditions, and assigning the set of sorted samples and the set of sorted microarrays to X-axis and Y-axis, and the accumulated luminescence intensity to Z-axis.

Abstract translation: 一种用于显示微阵列信息的方法，通过其从由微阵列获得的大量样本信息中提取未知但有用的信息。 对于每个微阵列，用微阵列获得的样品点的发光强度信息被标准化，并且作为与所关注的样品斑点的标准发光强度的差异显示为图。 因此，可以比较信息而不受微阵列之间的实验状态的差异或样品之间的物理性质的差异的影响。 通过在预定条件下对样本点所属的样本集和微阵列组进行排序，并将分类样本集合和分类微阵列组分配给X轴和Y轴来显示三维图形 ，和Z轴的累积发光强度。

公开(公告)号：US07127354B1

公开(公告)日：2006-10-24

申请号：US10129251

申请日：2000-09-19

Applicant: Yasuyuki Nozaki ,  Ryo Nakashige ,  Takuro Tamura

Inventor： Yasuyuki Nozaki ,  Ryo Nakashige ,  Takuro Tamura

IPC: G01N33/48

CPC classification number: G06F19/26 ,  G06F19/24

Abstract: A method of displaying gene data assists in discovering expression patterns specific to gene functions and inferring the function of a gene of which the function is unknown. A threshold value representing the degree of similarity of expression patterns is established in advance, and genes having the same function and genes with similar expression patterns to them are extracted and displayed. Cluster analysis is performed on the extracted genes by re-selecting the experiment patterns for clustering. Calculations are performed to see how many functions the genes belonging to a subtree have, and the proportion of each function in the subtree is determined. If a proportion exceeds a predetermined threshold value, they are regarded as a cluster (collection of genes with similar functions) and extracted.

Abstract translation: 显示基因数据的方法有助于发现基因功能特异性的表达模式，并推断功能未知的基因的功能。 预先建立表示模式相似程度的阈值，提取并显示具有相同功能的基因和具有相似表达模式的基因。 通过重新选择聚类的实验模式对提取的基因进行聚类分析。 执行计算以查看属于子树的基因有多少功能，并确定子树中每个功能的比例。 如果比例超过预定阈值，则将其视为簇（具有相似功能的基因的集合）并提取。

公开(公告)号：US20050203889A1

公开(公告)日：2005-09-15

申请号：US11039176

申请日：2005-01-20

Applicant: Kousaku Okubo ,  Takuro Tamura

Inventor： Kousaku Okubo ,  Takuro Tamura

IPC: G06F17/30

CPC classification number: G06F17/30716 ,  G06F17/2735

Abstract: A system for visibly processing observed information may include a configuration for systematizing information; a knowledge accumulation housing unit for storing knowledge accumulations from knowledge information belonging to each such configuration; an observed information receiving unit for receiving, from a user, information observed by the user; a fixed quantity processing unit for assigning a fixed quantity to a relationship between the observed information and the knowledge information belonging to each configuration for the knowledge accumulations; and a fixed quantity value display processing unit for displaying a numerical value of the fixed quantity, in accordance with the fixed quantity processing unit, together with its relationship with each configuration of the knowledge accumulations.

Abstract translation: 用于可视地处理观察信息的系统可以包括用于使信息系统化的配置; 知识积累住房单元，用于从属于每个这样的配置的知识信息中存储知识积累; 观察信息接收单元，用于从用户接收用户观察到的信息; 固定数量处理单元，用于将固定数量分配给观察信息与属于知识积累的每个配置的知识信息之间的关系; 以及固定量值显示处理单元，用于根据固定量处理单元与其与知识积累的每个配置的关系显示固定量的数值。