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1.
公开(公告)号:US11931400B2
公开(公告)日:2024-03-19
申请号:US15914925
申请日:2018-03-07
申请人: PSOMAGEN, INC.
发明人: Zachary Apte , Jessica Richman , Daniel Almonacid , Melissa Alegria , Valeria Marquez , Eduardo Morales , Rodrigo Ortiz , Janet Torres , Paulo Covarrubias , Javier Gimpel , Ingrid Araya
CPC分类号: A61K38/164 , A61K38/08 , C07K14/001 , G01N33/68 , Y02A50/30
摘要: Therapeutic compositions and an associated method for improving a Toll-like receptor (TLR)-related condition, including determining a set of peptide sequences associated with a microorganism-related modulator of a TLR, determining a first set of binding parameters for the set of peptide sequences in relation to the TLR, selecting a target subset of peptide sequences from the set of peptide sequences based on the first set of binding parameters, reengineering the target subset of peptide sequences based on mutating amino acid residues of the target subset of peptide sequences, determining a second set of binding parameters for the reengineered target subset of peptide sequences in relation to the TLR, and identifying a first peptide for use in a therapeutic composition for improving the TLR-related condition, based on the second set of binding parameters for the reengineered target subset of peptide sequences.
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公开(公告)号:US11621055B2
公开(公告)日:2023-04-04
申请号:US16645077
申请日:2018-09-14
申请人: PSOMAGEN, INC.
发明人: Zachary Apte , Jessica Richman , Daniel Almonacid , Patricio Lagos , Ricardo Castro , Paz Tapia
摘要: Embodiments of a method and/or system, such as for characterizing at least one microorganism-related condition, can include: determining a set of associations (e.g., positive associations such as positive correlations, negative associations such as negative correlations, non-associations such as no correlation or minimal correlation, etc.) between a set of microorganism taxa and at least one microorganism-related condition; determining a set of reference features (e.g., reference abundance ranges, etc.) for the set of microorganism taxa; and determining one or more significance index metrics based on the set of associations and the set of reference features.
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公开(公告)号:US20220189584A1
公开(公告)日:2022-06-16
申请号:US17598954
申请日:2020-03-27
申请人: PSOMAGEN INC.
IPC分类号: G16B40/20 , G16B15/20 , A61K35/741 , G16B20/00
摘要: A method for treating a microorganism-related condition in a patient may include detecting microorganisms in a set of samples collected from a population and comparing a relative abundance of and co-occurrence between different microbial taxa in the set of samples. The method further includes associating a change in the relative abundance of or the co-occurrence between the microbial taxa with samples from people, among the population, with the microorganism-related condition and samples from people, among the population, without the microorganism-related condition to determine a target taxa. A blend of bacteriophages is then identified, the blend being configured to remove the target taxa from a community of microorganisms A therapeutic composition comprising the blend is then administered to the patient with the microorganism-related condition.
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公开(公告)号:US10803991B2
公开(公告)日:2020-10-13
申请号:US15606743
申请日:2017-05-26
申请人: PSOMAGEN, INC.
发明人: Zachary Apte , Jessica Richman , Daniel Almonacid
IPC分类号: G01N33/48 , G16H40/67 , G16B50/00 , C12Q1/68 , C12Q1/6883 , C12Q1/689 , G06F19/00 , G16H50/20 , G16H20/10 , G16B99/00 , G16B5/00 , G16H50/50 , G06G7/58
摘要: A method for diagnosing and treating an immune microbial dysfunction in a subject, the method comprising: receiving an aggregate set of biological samples from a population of subjects; generating at least one of a microbiome composition dataset and a microbiome functional diversity dataset for the population of subjects; generating a characterization of the immune microbial dysfunction based upon features extracted from at least one of the microbiome composition dataset and the microbiome functional diversity dataset, wherein the characterization is diagnostic of at least one of Crohn's disease, inflammatory bowel disease (IBD), irritable bowel syndrome (IBS), ulcerative colitis, and celiac disease; based upon the characterization, generating a therapy model configured to correct the immune microbial dysfunction; and at an output device associated with the subject, promoting a therapy to the subject based upon the characterization and the therapy model.
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公开(公告)号:US10803147B2
公开(公告)日:2020-10-13
申请号:US15668956
申请日:2017-08-04
申请人: PSOMAGEN, INC.
发明人: Zachary Apte , Daniel Almonacid , Jessica Richman
摘要: A method for at least one of characterizing, diagnosing, and treating a locomotor system condition in at least a subject, the method comprising: receiving an aggregate set of biological samples from a population of subjects; generating at least one of a microbiome composition dataset and a microbiome functional diversity dataset for the population of subjects; generating a characterization of the locomotor system condition based upon features extracted from at least one of the microbiome composition dataset and the microbiome functional diversity dataset; based upon the characterization, generating a therapy model configured to correct the locomotor system condition; and at an output device associated with the subject, promoting a therapy to the subject based upon the characterization and the therapy model.
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公开(公告)号:US10795972B2
公开(公告)日:2020-10-06
申请号:US15679697
申请日:2017-08-17
申请人: PSOMAGEN, INC.
发明人: Zachary Apte , Daniel Almonacid , Jessica Richman
摘要: A method for at least one of characterizing, diagnosing, and treating a locomotor system condition in at least a subject, the method comprising: receiving an aggregate set of biological samples from a population of subjects; generating at least one of a microbiome composition dataset and a microbiome functional diversity dataset for the population of subjects; generating a characterization of the locomotor system condition based upon features extracted from at least one of the microbiome composition dataset and the microbiome functional diversity dataset; based upon the characterization, generating a therapy model configured to correct the locomotor system condition; and at an output device associated with the subject, promoting a therapy to the subject based upon the characterization and the therapy model.
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公开(公告)号:US10790061B2
公开(公告)日:2020-09-29
申请号:US15668653
申请日:2017-08-03
申请人: PSOMAGEN, INC.
发明人: Zachary Apte , Daniel Almonacid , Jessica Richman
IPC分类号: G01N33/48 , G16H50/20 , G06F19/00 , G16B50/00 , G16H50/70 , C12Q1/04 , C12Q1/24 , G01N33/569 , G16B40/00 , G16H50/50 , G16H10/40 , G16H20/70 , G06G7/58 , C12Q1/00
摘要: A method for at least one of characterizing, diagnosing, and treating a mental health associated condition in at least a subject, the method comprising: receiving an aggregate set of biological samples from a population of subjects; generating at least one of a microbiome composition dataset and a microbiome functional diversity dataset for the population of subjects; generating a characterization of the mental health associated condition based upon features extracted from at least one of the microbiome composition dataset and the microbiome functional diversity dataset; based upon the characterization, generating a therapy model configured to correct the mental health associated condition; and at an output device associated with the subject, promoting a therapy to the subject based upon the characterization and the therapy model.
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公开(公告)号:US20200263171A1
公开(公告)日:2020-08-20
申请号:US16644559
申请日:2018-09-07
申请人: PSOMAGEN, INC.
发明人: Zachary Apte , Jessica Richman , Daniel Almonacid , Eduardo Morales , Rodrigo Ortiz , Nicolas Ordenes , Juan Jimenez , Cristian Bravo , Natalia Scioscia , Eduardo Olivares , Luis Leon , Paulo Covarrubias , Felipe Sepulveda , Felipe Melis
IPC分类号: C12N15/10 , C12Q1/6874
摘要: Embodiments of a method and/or system, such as for preparation of a normalized library for sequencing such as next-generation sequencing, can include one or more of: generating one or more normalized amplicon libraries; generating one or more normalized microbial community-associated libraries; and/or generating one or more normalized combined sequence libraries associated with amplicon-associated sequencing and microbial community-associated sequencing.
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公开(公告)号:US10796800B2
公开(公告)日:2020-10-06
申请号:US15668636
申请日:2017-08-03
申请人: PSOMAGEN, INC.
发明人: Zachary Apte , Daniel Almonacid , Jessica Richman
IPC分类号: G01N33/48 , G16H50/20 , G06F19/00 , G16B50/00 , G16H50/70 , C12Q1/04 , C12Q1/24 , G01N33/569 , G16B40/00 , G16H50/50 , G16H10/40 , G16H20/70 , G06G7/58 , C12Q1/00
摘要: A method for at least one of characterizing, diagnosing, and treating a mental health associated condition in at least a subject, the method comprising: receiving an aggregate set of biological samples from a population of subjects; generating at least one of a microbiome composition dataset and a microbiome functional diversity dataset for the population of subjects; generating a characterization of the mental health associated condition based upon features extracted from at least one of the microbiome composition dataset and the microbiome functional diversity dataset; based upon the characterization, generating a therapy model configured to correct the mental health associated condition; and at an output device associated with the subject, promoting a therapy to the subject based upon the characterization and the therapy model.
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10.
公开(公告)号:US10796785B2
公开(公告)日:2020-10-06
申请号:US15655427
申请日:2017-07-20
申请人: PSOMAGEN, INC.
发明人: Zachary Apte , Daniel Almonacid , Jessica Richman
IPC分类号: G01N33/48 , G16B30/00 , C12Q1/689 , G06F19/00 , G16B5/00 , G16B40/00 , G16B50/00 , G16H50/20 , G06G7/58
摘要: A method for at least one of characterizing, diagnosing, and treating an endocrine system condition in at least a subject, the method comprising: receiving an aggregate set of biological samples from a population of subjects; generating at least one of a microbiome composition dataset and a microbiome functional diversity dataset for the population of subjects; generating a characterization of the endocrine system condition based upon features extracted from at least one of the microbiome composition dataset and the microbiome functional diversity dataset; based upon the characterization, generating a therapy model configured to correct the endocrine system condition; and at an output device associated with the subject, promoting a therapy to the subject based upon the characterization and the therapy model.
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