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公开(公告)号:US20210238643A1
公开(公告)日:2021-08-05
申请号:US17188248
申请日:2021-03-01
申请人: Nicole A Leal , Steven A Benner
发明人: Nicole A Leal , Steven A Benner
摘要: This invention relates to nucleotide analogs and their derivatives (termed non-standard nucleotides) that, when incorporated into DNA and RNA, expand the number of nucleotides beyond the four found in standard DNA and RNA. The invention further relates to enzymatic processes that incorporate those non-standard nucleotide analogs into oligonucleotide products using the corresponding triphosphate derivatives. The RNA polymerases of the instant invention transcribe DNA containing nonstandard nucleotides to give RNA containing nonstandard nucleotides, where certain of those nucleotides have nucleobases that do not present electron density to the minor groove.
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公开(公告)号:US11117922B1
公开(公告)日:2021-09-14
申请号:US16679501
申请日:2019-11-11
申请人: Nicole A Leal , Steven A Benner
发明人: Nicole A Leal , Steven A Benner
IPC分类号: C07H21/04 , C12N15/66 , C12N15/10 , C07H19/20 , C07H19/10 , C07H19/12 , C07H19/14 , C07H19/048
摘要: This invention claims processes that append a single nucleotide having a 3′-ONH2 moiety to the 3′-ends of an oligonucleotide primer using 3′-deoxynucleoside triphosphates that have, instead of a 3′-OH moiety, a 3′-ONH2 moiety, where the nucleotides contain both standard and non-standard nucleobases, and where as a key claim limitation, substantially no hydroxylamine is present in the solutions used in the claimed processes.
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公开(公告)号:US10829812B1
公开(公告)日:2020-11-10
申请号:US16216266
申请日:2018-12-11
申请人: Steven A Benner , Roberto Laos , Nicole A Leal , Zunyi Yang , Myong Jung Kim
发明人: Steven A Benner , Roberto Laos , Nicole A Leal , Zunyi Yang , Myong Jung Kim
IPC分类号: C12Q1/686 , C12Q1/6853 , C12Q1/6806
摘要: This invention relates to processes that amplify oligonucleotide analogs that incorporate non-standard nucleobase analogs from an artificially expanded genetic information system. These pair in DNA duplexes via patterns of hydrogen bonds that differ from patterns that join the thymine-adenine and guanine-cytosine nucleobase pairs.
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公开(公告)号:US10370706B1
公开(公告)日:2019-08-06
申请号:US16111590
申请日:2018-08-24
申请人: Shuichi Hoshika , Nicole A Leal , Steven A Benner
发明人: Shuichi Hoshika , Nicole A Leal , Steven A Benner
摘要: This invention covers a new molecular recognition system, where duplexes of DNA-like molecules comprise segments built from nucleotides that carry only a small pyrimidine-like analog, and where the segments pair by pyrimidine analog:pyrimidine analog “skinny” pairing. This pairing retains hydrogen bonding complementarity. Further, this invention relates to processes for preparing those duplexes, and processes that use such duplexes as primer:template complexes for reactions catalyzed by DNA polymerases.
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公开(公告)号:US10934569B1
公开(公告)日:2021-03-02
申请号:US16226963
申请日:2018-12-20
申请人: Nicole A Leal , Steven A Benner
发明人: Nicole A Leal , Steven A Benner
IPC分类号: C12P19/34
摘要: This invention relates to processes that transcribe DNA molecules containing non-standard nucleotides using variants of T7 RNA polymerase to give RNA transcripts that contain their complementary non-standard nucleotides. Non-standard nucleotides pair during transcription using patterns of hydrogen bonding that are different from patterns that join the thymine-adenine and guanine-cytosine nucleobase pairs.
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公开(公告)号:US10654841B1
公开(公告)日:2020-05-19
申请号:US15786086
申请日:2017-10-17
申请人: Steven A Benner , Nicole A Leal
发明人: Steven A Benner , Nicole A Leal
IPC分类号: C07D413/14 , C12P19/34 , C07H21/04
摘要: This invention claims processes that comprise the appending of nucleotides having a 3′-ONH2 moiety to the 3′-ends of oligonucleotide primers using 3′-deoxynucleoside triphosphates of 2′-deoxynucleoside derivatives that have, instead of a 3′-OH moiety, a 3′-ONH2 moiety, where the nucleotides contain non-standard nucleobases.
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公开(公告)号:US10745728B1
公开(公告)日:2020-08-18
申请号:US16113766
申请日:2018-08-27
申请人: Steven A Benner , Hyo-Joong Kim , Zunyi Yang
发明人: Steven A Benner , Hyo-Joong Kim , Zunyi Yang
摘要: This invention relates to the use of analogs of purines that have two tautomeric forms, one formally complementary to thymidine, the other formally complementary to cytidine, and analogs of pyrimidines that have two tautomeric forms, one formally complementary to guanosine, the other formally complementary to adenosine. These uses include the polymerase chain reaction amplification of targets having polymorphisms in primer binding sites and ligation.
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公开(公告)号:US10472383B2
公开(公告)日:2019-11-12
申请号:US15460475
申请日:2017-03-16
申请人: Steven A Benner
发明人: Steven A Benner
摘要: This invention claims aqueous compositions that comprise triphosphates of 2′-deoxynucleoside derivatives that have, instead of a 3′-OH moiety, a 3′-ONH2 moiety; wherein said compositions contain less than 0.5 mole percent contaminating triphosphate having a 3′-OH moiety, as well as processes for providing such compositions. The compositions further must contain insubstantial amounts of hydroxylamine.
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公开(公告)号:US10106837B1
公开(公告)日:2018-10-23
申请号:US14613960
申请日:2015-02-04
申请人: Steven A Benner
发明人: Steven A Benner
IPC分类号: C12Q1/68 , C12Q1/6806 , C12N15/10 , C12Q1/6844
摘要: This invention provides a single process that collects any and all target nucleic acids from a sample that can contain any of a number of biological species, including bacteria, viruses, or fungi, where the first step renders the sample nonhazardous and releases nucleic acids from cell structures, compartments, and molecular complexes that may hold them, the second step concentrates the target nucleic acids from even very highly dilute states, in the third step releases these in a form that, following dilution, makes them compatible with processes that amplify nucleic acids, both standard PCR as well as isothermal amplification protocols. The pre-amplification process involves ammonia solutions no more toxic than those found in the commercial product Windex, requires no electrical power, requires materials no more complex than water desalinization resin and salt, and can be used by inexperienced individuals.
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公开(公告)号:US10059737B1
公开(公告)日:2018-08-28
申请号:US15461073
申请日:2017-03-16
申请人: Steven A Benner , Shuichi Hoshika
发明人: Steven A Benner , Shuichi Hoshika
IPC分类号: C07H21/04
CPC分类号: C07H21/04
摘要: This invention is for a new molecular recognition system, where DNA-like molecules comprising segments built from nucleotides that carry only a small which comprises process by which one molecule interacts with a specific second molecule, or by which a portion of a single molecule interacts specifically with another portion of the same molecule. Further, this invention relates to molecular recognition that follows simple rules. Further, this invention relates to molecular systems that are linear biopolymers that are analogs of DNA and RNA, in that they are built from a small set of building blocks that are linked together by phosphate groups, where the building blocks comprise a sugar (ribose, 2′-deoxyribose, or an analog) attached to a heterocycle. The molecular recognition that they display differs from that displayed by DNA and RNA, in that the rules governing molecular recognition break the rules of size complementarity followed in molecular recognition displayed between and within strands of DNA and RNA.
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