METHODS AND COMPOSITIONS FOR SINGLE CELL SECRETOMICS

    公开(公告)号:US20210222244A1

    公开(公告)日:2021-07-22

    申请号:US17151058

    申请日:2021-01-15

    Abstract: Systems, methods, compositions, and kits for measuring secreted factors from cells are disclosed herein, including those capable of determining single cell secretion activity and protein expression and/or gene expression simultaneously. Disclosed herein include bispecific probes comprising an anchor probe capable of specifically binding to a surface cellular target of a cell, and a capture probe capable of specifically binding to a secreted factor secreted by a cell that is associated with the capture probe. Also disclosed herein include secreted factor-binding reagents capable of specifically binding to a secreted factor bound by a capture probe, where a secreted factor-binding reagent can comprise a secreted factor-binding reagent specific oligonucleotide comprising a unique factor identifier sequence for the secreted factor-binding reagent.

    Scaffolded Chromophores for Nucleic Acid Detection and Methods and Uses Thereof

    公开(公告)号:US20250092458A1

    公开(公告)日:2025-03-20

    申请号:US18821342

    申请日:2024-08-30

    Abstract: Scaffolded chromophores for nucleic acid detection and systems, methods, and uses thereof are provided. Certain embodiments are directed to nucleic acid probes that include a nucleic acid that is complementary to a target sequence. The probe further includes a dye structure linked to a first end of the nucleic acid and includes a non-conjugated polymeric backbone with one or more donor fluorophores linked to the polymeric backbone and one or more acceptor fluorophores linked to the polymeric backbone, where the donor and acceptor fluorophores are in energy transfer relationship. Such probes can further include a quencher attached to a second end of the nucleic acid, where the quencher and one or more acceptor fluorophores are in an energy transfer relationship. Additional embodiments include a second nucleic acid probe including a second nucleic acid that is complementary to a different target sequence.

    SPATIAL MULTIOMICS USING IN SITU REVERSE TRANSCRIPTION

    公开(公告)号:US20240384354A1

    公开(公告)日:2024-11-21

    申请号:US18687030

    申请日:2022-08-31

    Abstract: Disclosed herein include systems, methods, compositions, and kits for determining the spatial location and copy number of targets (e.g., nucleic acid targets, cellular component targets) in a sample. There are provided, in some embodiments, substrates comprising a plurality of spatial regions. A plurality of oligonucleotide barcodes can be associated with each of the spatial regions and can comprise a predetermined spatial label. Oligonucleotide barcodes of the same spatial region can comprise the same spatial label, and oligonucleotide barcodes of the different spatial regions can comprise different spatial labels. The method can comprise contacting the substrate with a sample such that each distinct spatial region contacts a distinct spatial location of the sample. The method can comprise in situ extension (e.g., reverse transcription) of the oligonucleotide barcodes.

    Cell-surface signatures for isolating neurons from cell cultures derived from pluripotent stem cells
    19.
    发明授权
    Cell-surface signatures for isolating neurons from cell cultures derived from pluripotent stem cells 有权
    从多能干细胞衍生的细胞培养物中分离神经元的细胞表面特征

    公开(公告)号:US09341625B2

    公开(公告)日:2016-05-17

    申请号:US14381547

    申请日:2013-04-23

    Abstract: The inventors disclose methods and systems that provide for the isolation and purification of neurons directly from heterogeneous cell cultures. The expression of various cell adhesion molecules was examined in pluripotent stem cells. Changes in the expression of one or more of these molecules correlates with the progression of cells from non-lineage committed to neural cells. Using one or more antibodies for these molecules in combination with antibodies specific for CD200 will enable one to identify and isolate neurons from a population cells.

    Abstract translation: 本发明人公开了提供从异质细胞培养物直接分离和纯化神经元的方法和系统。 在多能干细胞中检测各种细胞粘附分子的表达。 这些分子中的一个或多个表达的变化与从非谱系致神经细胞的细胞进展相关。 将这些分子的一种或多种抗体与CD200特异性抗体结合使用,可以从群体细胞中鉴定和分离神经元。

    HIGHLY EFFICIENT PARTITION LOADING OF SINGLE CELLS

    公开(公告)号:US20240050949A1

    公开(公告)日:2024-02-15

    申请号:US18232210

    申请日:2023-08-09

    Abstract: Methods of producing partitioned single cell/barcoded bead compositions are provided. Aspects of the methods include: contacting a composition of encapsulated single cells, e.g. double emulsion single cell droplets or gel encapsulated single cells, with a plurality of microwells such that at least a portion of the plurality of microwells include a sole deposited encapsulated cell, e.g., a sole deposited cell containing double emulsion droplet or gel bead; releasing the single cells from their encapsulation, e.g., by disrupting deposited double emulsion single cell droplets or dissolving gel beads, to generate microwells comprising released single cells; and introducing barcoded beads into microwells comprising released single cells to produce partitioned single cell/barcoded bead compositions. Also provided are compositions for practicing methods of the invention. The methods and compositions of the invention find use in a variety of applications, such as single cell sequencing applications.

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