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公开(公告)号:US20190062830A1
公开(公告)日:2019-02-28
申请号:US16123166
申请日:2018-09-06
Applicant: Life Technologies Corporation
Inventor: Theo NIKIFOROV , Daniel MAZUR , Xinzhan PENG , Tommie Lloyd LINCECUM , Yuri BELOSLUDTSEV , Howard REESE , Dmitriy GREMYACHINSKIY , Roman ROZHKOV , John MAURO , Joseph BEECHEM , Eric TULSKY , Imad NAASANI , Kari HALEY , Joseph TREADWAY
IPC: C12Q1/6869 , C12N9/12 , G01N33/58 , G01N21/64 , C07H19/20 , C12Q1/6818 , C12N9/96
Abstract: Disclosed herein are conjugates comprising a biomolecule linked to a label that have biological activity and are useful in a wide variety of biological applications. For example, provided herein are polymerase-nanoparticle conjugates including a polymerase linked to a nanoparticle, wherein the conjugate has polymerase activity. Such conjugates can exhibit reduced aggregation and improved stochiometries wherein the average biomolecule:nanoparticle ratio approaches or equals 1:1. Also disclosed herein are improved methods for preparing such conjugates, and methods and systems for using such conjugates in biological applications such as nucleotide incorporation, primer extension and single molecule sequencing.
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公开(公告)号:US20160265044A1
公开(公告)日:2016-09-15
申请号:US15166372
申请日:2016-05-27
Applicant: LIFE TECHNOLOGIES CORPORATION
Inventor: Theo NIKIFOROV , Daniel MAZUR , Xinzhan PENG , Tommie Lloyd LINCECUM , Yuri BELOSLUDTSEV , Howard REESE , Dmitriy GREMYACHINSKIY , Roman ROZHKOV , John MAURO , Joseph BEECHEM , Eric TULSKY , Imad NAASANI , Kari HALEY , Joseph TREADWAY
CPC classification number: C12Q1/6869 , C07H19/20 , C12N9/1241 , C12N9/1252 , C12N9/96 , C12Q1/6818 , C12Y207/07 , C12Y207/07007 , G01N21/6428 , G01N33/582 , G01N2021/6432
Abstract: Disclosed herein are conjugates comprising a biomolecule linked to a label that have biological activity and are useful in a wide variety of biological applications. For example, provided herein are polymerase-nanoparticle conjugates including a polymerase linked to a nanoparticle, wherein the conjugate has polymerase activity. Such conjugates can exhibit reduced aggregation and improved stochiometries wherein the average biomolecule:nanoparticle ratio approaches or equals 1:1. Also disclosed herein are improved methods for preparing such conjugates, and methods and systems for using such conjugates in biological applications such as nucleotide incorporation, primer extension and single molecule sequencing.
Abstract translation: 本文公开了包含连接到具有生物活性并可用于多种生物应用的标签的生物分子的缀合物。 例如,本文提供了聚合酶 - 纳米颗粒缀合物,其包括与纳米颗粒连接的聚合酶,其中缀合物具有聚合酶活性。 这样的缀合物可以表现出减少的聚集和改进的沉淀物,其中平均生物分子:纳米颗粒比接近或等于1:1。 本文还公开了制备这种缀合物的改进方法,以及在生物应用中使用这种缀合物的方法和系统,例如核苷酸掺入,引物延伸和单分子测序。
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13.
公开(公告)号:US20150094211A1
公开(公告)日:2015-04-02
申请号:US14502201
申请日:2014-09-30
Applicant: LIFE TECHNOLOGIES CORPORATION
Inventor: Peter VANDER HORN , Daniel MAZUR , Theo NIKIFOROV , Mindy LANDES , Eileen TOZER
CPC classification number: C12N9/1252 , C12Q1/686 , C12Q1/6869
Abstract: The present disclosure provides compositions, methods, kits, systems and apparatus that are useful for nucleic acid polymerization. In particular, modified polymerases and biologically active fragments thereof are provided that allow for nucleic acid amplification. In some aspects, the disclosure provides modified polymerases having lower systematic error as compared to a reference polymerase. In one aspect, the disclosure relates to modified polymerases useful for nucleic acid sequencing, genotyping, copy number variation analysis, paired-end sequencing and other forms of genetic analysis. In some aspects, the disclosure relates to modified polymerases useful for the generation of nucleic acid libraries or nucleic acid templates. In some aspects, the disclosure relates to the identification of homologous amino acid mutations that can be transferred across classes or families of polymerases to provide novel polymerases with altered properties.
Abstract translation: 本公开提供了可用于核酸聚合的组合物,方法,试剂盒,系统和装置。 特别地,提供了允许核酸扩增的修饰的聚合酶及其生物活性片段。 在一些方面,本公开提供与参考聚合酶相比具有较低系统误差的修饰聚合酶。 一方面,本公开涉及可用于核酸测序,基因分型,拷贝数变异分析,配对末端测序和其他形式遗传分析的修饰聚合酶。 在一些方面,本公开涉及可用于产生核酸文库或核酸模板的修饰聚合酶。 在一些方面,本公开涉及可以跨越聚合酶的类或家族转移的同源氨基酸突变的鉴定,以提供具有改变的性质的新型聚合酶。
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公开(公告)号:US20220162573A1
公开(公告)日:2022-05-26
申请号:US17645146
申请日:2021-12-20
Applicant: Life Technologies Corporation
Inventor: Peter VANDER HORN , Theo NIKIFOROV , Guobin LUO , Mindy LANDES , Daniel MAZUR , Eileen TOZER , Tommie LINCECUM
IPC: C12N9/12 , C12Q1/6844 , C12Q1/686
Abstract: The present disclosure provides compositions, methods, kits, systems and apparatus that are useful for nucleic acid polymerization. In particular, modified polymerases and biologically active fragment thereof are provided that allow for nucleic acid amplification. In one aspect, the disclosure relates to modified polymerases useful for nucleic acid sequencing, genotyping, copy number variation analysis, paired-end sequencing and other forms of genetic analysis. In some aspects, the disclosure relates to modified polymerases useful for the generation of nucleic acid libraries or nucleic acid templates for use in various downstream processes. In some aspects, the disclosure relates to the identification of homologous amino acid mutations that can be transferred across classes or families of polymerases to provide novel polymerases with altered catalytic properties. In some aspects, the disclosure provides modified polymerases having enhanced catalytic properties as compared to a reference polymerase.
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公开(公告)号:US20210371834A1
公开(公告)日:2021-12-02
申请号:US17445047
申请日:2021-08-13
Applicant: LIFE TECHNOLOGIES CORPORATION
Inventor: Peter VANDER HORN , Daniel MAZUR , Theo NIKIFOROV , Mindy LANDES , Eileen TOZER
IPC: C12N9/12 , C12Q1/686 , C12Q1/6869
Abstract: The present disclosure provides compositions, methods, kits, systems and apparatus that are useful for nucleic acid polymerization. In particular, modified polymerases and biologically active fragments thereof are provided that allow for nucleic acid amplification. In some aspects, the disclosure provides modified polymerases having lower systematic error as compared to a reference polymerase. In one aspect, the disclosure relates to modified polymerases useful for nucleic acid sequencing, genotyping, copy number variation analysis, paired-end sequencing and other forms of genetic analysis. In some aspects, the disclosure relates to modified polymerases useful for the generation of nucleic acid libraries or nucleic acid templates. In some aspects, the disclosure relates to the identification of homologous amino acid mutations that can be transferred across classes or families of polymerases to provide novel polymerases with altered properties.
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公开(公告)号:US20210284976A1
公开(公告)日:2021-09-16
申请号:US17302621
申请日:2021-05-07
Applicant: LIFE TECHNOLOGIES CORPORATION
Inventor: Daniel MAZUR , Peter B. VANDER HORN , Eileen TOZER , Sihong CHEN , Guobin LUO , Joshua SHIRLEY , Kevin HEINEMANN
Abstract: The present disclosure provides compositions, methods, kits, systems and apparatus that are useful for nucleic acid polymerization. In particular, recombinant polymerases and biologically active fragments thereof are provided that allow for nucleic acid amplification. In some aspects, the disclosure provides recombinant polymerases that yield lower systematic error rates and/or improved accuracy, when used in sequencing by synthesis reactions as compared to a control polymerase. In one aspect, the disclosure relates to recombinant polymerases useful for nucleic acid sequencing, genotyping, copy number variation analysis, paired-end sequencing and other forms of genetic analysis. In another aspect, the recombinant polymerases are useful for the amplification of nucleic acid templates during PCR, emPCR, isothermal amplification, recombinase polymerase amplification, rolling circle amplification, strand displacement amplification and proximity ligation amplification. In some aspects, the disclosure relates to recombinant polymerases useful for the generation of nucleic acid libraries and/or nucleic acid templates.
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公开(公告)号:US20190062828A1
公开(公告)日:2019-02-28
申请号:US16123104
申请日:2018-09-06
Applicant: Life Technologies Corporation
Inventor: Stephen P. HENDRICKS , Michael PHELAN , Marian PERIS , Cheng-Yao CHEN , Daniel MAZUR , Xinzhan PENG , Amy CASTILLO
IPC: C12Q1/6869 , C12N9/12 , G01N33/58 , G01N21/64 , C07H19/20 , C12Q1/6818 , C12N9/96
Abstract: Disclosed herein are modified polymerase compositions exhibiting altered polymerase activity, which can be useful in a variety of biological applications. Also disclosed herein are methods of making and using such compositions. In some embodiments, the compositions exhibit altered properties that can enhance their utility in a variety of biological applications. Such altered properties, can include, for example, altered nucleotide binding affinities, altered nucleotide incorporation kinetics, altered photostability and/or altered nanoparticle tolerance, as well as a range of other properties as disclosed herein.
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公开(公告)号:US20190002872A1
公开(公告)日:2019-01-03
申请号:US16024175
申请日:2018-06-29
Applicant: LIFE TECHNOLOGIES CORPORATION
Inventor: Mark ANDERSEN , Daniel MAZUR
IPC: C12N15/10 , C12Q1/6855
Abstract: Provided are methods for preparing a library of target nucleic acid sequences, as well as compositions and uses therefor. Methods comprise contacting a nucleic acid sample with a plurality of adaptors capable of amplification of one or more target nucleic acid sequences under conditions wherein the target nucleic acid(s) undergo a first amplification; digesting the resulting first amplification products; repairing the digested target amplicons; and amplifying the repaired products in a second amplification, thereby producing a library of target nucleic acid sequence. Each of the plurality of adaptor compositions comprise a handle and a targeted nucleic acid sequence and optionally one or more tag sequences. Provided methods may be carried out in a single, addition only workflow reaction, allowing for rapid production of highly multiplexed targeted libraries, optionally including unique tag sequences. Resulting library compositions are useful for a variety of applications, including sequencing applications.
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